SNP Detail Info-rs7597928

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.213727658A>G
GRCh37.p13 chr 2	NC_000002.11:g.214592382A>G

Gene: SPAG16, sperm associated antigen 16(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SPAG16 transcript variant 1	NM_024532.4:c.	N/A	Intron Variant
SPAG16 transcript variant 2	NM_001025436.2:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant 3	NR_047659.1:n.	N/A	Intron Variant
SPAG16 transcript variant 4	NR_047660.1:n.	N/A	Intron Variant
SPAG16 transcript variant X1	XM_011511814.1:c.	N/A	Intron Variant
SPAG16 transcript variant X2	XM_011511815.1:c.	N/A	Intron Variant
SPAG16 transcript variant X3	XM_011511816.2:c.	N/A	Intron Variant
SPAG16 transcript variant X4	XM_011511817.1:c.	N/A	Intron Variant
SPAG16 transcript variant X5	XM_011511818.1:c.	N/A	Intron Variant
SPAG16 transcript variant X6	XM_011511819.2:c.	N/A	Intron Variant
SPAG16 transcript variant X7	XM_011511820.1:c.	N/A	Intron Variant
SPAG16 transcript variant X8	XM_011511821.2:c.	N/A	Intron Variant
SPAG16 transcript variant X10	XM_011511822.1:c.	N/A	Intron Variant
SPAG16 transcript variant X9	XM_011511823.2:c.	N/A	Intron Variant
SPAG16 transcript variant X11	XM_011511824.1:c.	N/A	Intron Variant
SPAG16 transcript variant X18	XM_011511831.1:c.	N/A	Intron Variant
SPAG16 transcript variant X24	XM_011511835.2:c.	N/A	Intron Variant
SPAG16 transcript variant X12	XM_017004896.1:c.	N/A	Intron Variant
SPAG16 transcript variant X13	XM_017004897.1:c.	N/A	Intron Variant
SPAG16 transcript variant X14	XM_017004898.1:c.	N/A	Intron Variant
SPAG16 transcript variant X22	XM_017004900.1:c.	N/A	Intron Variant
SPAG16 transcript variant X23	XM_017004901.1:c.	N/A	Intron Variant
SPAG16 transcript variant X25	XM_017004902.1:c.	N/A	Intron Variant
SPAG16 transcript variant X21	XM_006712746.2:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X15	XM_011511827.1:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X16	XM_011511828.1:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X17	XM_011511829.1:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X19	XM_011511832.1:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X26	XM_011511837.2:c.	N/A	Genic Downstream Transcript Variant
SPAG16 transcript variant X20	XM_017004899.1:c.	N/A	Genic Downstream Transcript Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.440	G=0.560
1000Genomes	American	Sub	694	A=0.050	G=0.950
1000Genomes	East Asian	Sub	1008	A=0.003	G=0.997
1000Genomes	Europe	Sub	1006	A=0.020	G=0.980
1000Genomes	Global	Study-wide	5008	A=0.139	G=0.861
1000Genomes	South Asian	Sub	978	A=0.060	G=0.940
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.012	G=0.988
The Genome Aggregation Database	African	Sub	8678	A=0.400	G=0.600
The Genome Aggregation Database	American	Sub	836	A=0.040	G=0.960
The Genome Aggregation Database	East Asian	Sub	1622	A=0.001	G=0.999
The Genome Aggregation Database	Europe	Sub	18486	A=0.016	G=0.984
The Genome Aggregation Database	Global	Study-wide	29924	A=0.127	G=0.872
The Genome Aggregation Database	Other	Sub	302	A=0.070	G=0.930
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.192	G=0.807
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.013	G=0.987

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs7597928	0.000144	alcohol dependence	21314694

eQTL of rs7597928 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs7597928 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7597928

Genomic Coordinates

Gene: SPAG16, sperm associated antigen 16(plus strand)

Population Frequency

P-Value

eQTL of rs7597928 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs7597928 in Fetal Brain

Genomic View

Chromatin Interaction