rs7598938

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0335 (10042/29918,GnomAD)
T=0388 (11305/29118,TOPMED)
T=0375 (1878/5008,1000G)
T=0214 (824/3854,ALSPAC)
T=0202 (750/3708,TWINSUK)
chr2:160550282 (GRCh38.p7) (2q24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.160550282C>T
GRCh37.p13 chr 2NC_000002.11:g.161406793C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.390T=0.610
1000GenomesAmericanSub694C=0.580T=0.420
1000GenomesEast AsianSub1008C=0.757T=0.243
1000GenomesEuropeSub1006C=0.767T=0.233
1000GenomesGlobalStudy-wide5008C=0.625T=0.375
1000GenomesSouth AsianSub978C=0.690T=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.786T=0.214
The Genome Aggregation DatabaseAfricanSub8692C=0.430T=0.570
The Genome Aggregation DatabaseAmericanSub836C=0.600T=0.400
The Genome Aggregation DatabaseEast AsianSub1620C=0.769T=0.231
The Genome Aggregation DatabaseEuropeSub18468C=0.767T=0.232
The Genome Aggregation DatabaseGlobalStudy-wide29918C=0.664T=0.335
The Genome Aggregation DatabaseOtherSub302C=0.690T=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.611T=0.388
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.798T=0.202
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs75989380.0005alcohol dependence20201924

eQTL of rs7598938 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7598938 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.