rs760659

Homo sapiens
T>C
JARID2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0262 (7854/29928,GnomAD)
T==0296 (8628/29118,TOPMED)
T==0275 (1378/5008,1000G)
T==0228 (877/3854,ALSPAC)
T==0230 (851/3708,TWINSUK)
chr6:15504358 (GRCh38.p7) (6p22.3)
AD
GWASdb2
2   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.15504358T>C
GRCh37.p13 chr 6NC_000006.11:g.15504589T>C

Gene: JARID2, jumonji and AT-rich interaction domain containing 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
JARID2 transcript variant 2NM_001267040.1:c.N/AIntron Variant
JARID2 transcript variant 1NM_004973.3:c.N/AIntron Variant
JARID2 transcript variant X4XM_005249089.3:c.N/AIntron Variant
JARID2 transcript variant X1XM_011514579.2:c.N/AIntron Variant
JARID2 transcript variant X6XM_011514584.2:c.N/AIntron Variant
JARID2 transcript variant X2XM_017010833.1:c.N/AIntron Variant
JARID2 transcript variant X3XM_017010834.1:c.N/AIntron Variant
JARID2 transcript variant X5XM_017010835.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.470C=0.530
1000GenomesAmericanSub694T=0.260C=0.740
1000GenomesEast AsianSub1008T=0.085C=0.915
1000GenomesEuropeSub1006T=0.241C=0.759
1000GenomesGlobalStudy-wide5008T=0.275C=0.725
1000GenomesSouth AsianSub978T=0.250C=0.750
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.228C=0.772
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.296C=0.703
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.230C=0.770
PMID Title Author Journal
12098102Genetic variation in the 6p22.3 gene DTNBP1, the human ortholog of the mouse dysbindin gene, is associated with schizophrenia.Straub REAm J Hum Genet
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs7606590.000778alcohol consumption (maxi-drinks)24277619

eQTL of rs760659 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs760659 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr61545751815457568E067-47021
chr61545852415458711E067-45878
chr61545881515458895E067-45694
chr61546043515460675E067-43914
chr61546759415467749E067-36840
chr61547256515472694E067-31895
chr61547295215473094E067-31495
chr61547611615476209E067-28380
chr61547628215476367E067-28222
chr61547652115476610E067-27979
chr61547712315477457E067-27132
chr61547759415477642E067-26947
chr61547779615477900E067-26689
chr61547812515478238E067-26351
chr61547834415478439E067-26150
chr61548001915480370E067-24219
chr61548071815480768E067-23821
chr61548448815484598E067-19991
chr61548623515486446E067-18143
chr61549107315491177E067-13412
chr61549128515491342E067-13247
chr61549136615491456E067-13133
chr61549149115491979E067-12610
chr61549223815492288E067-12301
chr61549231015492383E067-12206
chr61549557515496148E067-8441
chr61550198815502050E067-2539
chr61550205715502653E067-1936
chr61550266615503566E067-1023
chr61550371515503779E067-810
chr61550388615504195E067-394
chr61550585215506202E0671263
chr61551120215511278E0676613
chr61552183415522184E06717245
chr61552244715522561E06717858
chr61553904515539303E06734456
chr61554995215550098E06745363
chr61555016115550260E06745572
chr61545493615455041E068-49548
chr61545751815457568E068-47021
chr61545819515458428E068-46161
chr61545852415458711E068-45878
chr61545881515458895E068-45694
chr61546001615460070E068-44519
chr61546043515460675E068-43914
chr61546176415462015E068-42574
chr61546759415467749E068-36840
chr61546792215467972E068-36617
chr61547256515472694E068-31895
chr61547295215473094E068-31495
chr61547611615476209E068-28380
chr61547628215476367E068-28222
chr61547652115476610E068-27979
chr61547664815476770E068-27819
chr61547691315477046E068-27543
chr61547712315477457E068-27132
chr61547759415477642E068-26947
chr61548001915480370E068-24219
chr61549107315491177E068-13412
chr61549128515491342E068-13247
chr61549136615491456E068-13133
chr61549149115491979E068-12610
chr61549223815492288E068-12301
chr61549231015492383E068-12206
chr61549557515496148E068-8441
chr61550080615500871E068-3718
chr61550167615501794E068-2795
chr61550198815502050E068-2539
chr61550205715502653E068-1936
chr61550266615503566E068-1023
chr61550371515503779E068-810
chr61550388615504195E068-394
chr61550585215506202E0681263
chr61550658515506625E0681996
chr61551120215511278E0686613
chr61551156515511701E0686976
chr61551208315512278E0687494
chr61551250715512652E0687918
chr61552183415522184E06817245
chr61552244715522561E06817858
chr61552273515522993E06818146
chr61553904515539303E06834456
chr61554012915540237E06835540
chr61554131615541580E06836727
chr61554694915547077E06842360
chr61554720015547274E06842611
chr61554737615548025E06842787
chr61555108615551188E06846497
chr61555156315551928E06846974
chr61555200915552378E06847420
chr61545493615455041E069-49548
chr61545513415455219E069-49370
chr61545751815457568E069-47021
chr61545819515458428E069-46161
chr61545852415458711E069-45878
chr61545881515458895E069-45694
chr61546298115463667E069-40922
chr61546759415467749E069-36840
chr61547652115476610E069-27979
chr61547664815476770E069-27819
chr61547691315477046E069-27543
chr61547712315477457E069-27132
chr61547759415477642E069-26947
chr61548001915480370E069-24219
chr61548071815480768E069-23821
chr61548091015481065E069-23524
chr61548448815484598E069-19991
chr61549107315491177E069-13412
chr61549128515491342E069-13247
chr61549136615491456E069-13133
chr61549149115491979E069-12610
chr61550167615501794E069-2795
chr61550198815502050E069-2539
chr61550205715502653E069-1936
chr61550266615503566E069-1023
chr61550371515503779E069-810
chr61550388615504195E069-394
chr61550585215506202E0691263
chr61550658515506625E0691996
chr61550918015509415E0694591
chr61550962015509707E0695031
chr61551156515511701E0696976
chr61551208315512278E0697494
chr61551250715512652E0697918
chr61552183415522184E06917245
chr61552244715522561E06917858
chr61553904515539303E06934456
chr61555156315551928E06946974
chr61555200915552378E06947420
chr61545751815457568E070-47021
chr61546298115463667E070-40922
chr61548001915480370E070-24219
chr61548071815480768E070-23821
chr61548091015481065E070-23524
chr61548114015481203E070-23386
chr61548159615481719E070-22870
chr61548176215481971E070-22618
chr61549149115491979E070-12610
chr61549644315496600E070-7989
chr61550198815502050E070-2539
chr61550205715502653E070-1936
chr61550266615503566E070-1023
chr61550371515503779E070-810
chr61550388615504195E070-394
chr61550585215506202E0701263
chr61550658515506625E0701996
chr61545751815457568E071-47021
chr61545819515458428E071-46161
chr61545852415458711E071-45878
chr61545881515458895E071-45694
chr61546001615460070E071-44519
chr61546043515460675E071-43914
chr61546095315461033E071-43556
chr61546130615461612E071-42977
chr61546168715461762E071-42827
chr61546176415462015E071-42574
chr61546298115463667E071-40922
chr61546759415467749E071-36840
chr61547256515472694E071-31895
chr61547295215473094E071-31495
chr61547628215476367E071-28222
chr61547652115476610E071-27979
chr61547664815476770E071-27819
chr61547691315477046E071-27543
chr61547712315477457E071-27132
chr61547759415477642E071-26947
chr61547779615477900E071-26689
chr61548001915480370E071-24219
chr61548071815480768E071-23821
chr61548091015481065E071-23524
chr61548448815484598E071-19991
chr61549007715490127E071-14462
chr61549018015490235E071-14354
chr61549038515490501E071-14088
chr61549056515490729E071-13860
chr61549075215490811E071-13778
chr61549089715490947E071-13642
chr61549107315491177E071-13412
chr61549128515491342E071-13247
chr61549136615491456E071-13133
chr61549149115491979E071-12610
chr61549223815492288E071-12301
chr61549231015492383E071-12206
chr61549367915494015E071-10574
chr61550205715502653E071-1936
chr61550266615503566E071-1023
chr61550371515503779E071-810
chr61550388615504195E071-394
chr61550585215506202E0711263
chr61550658515506625E0711996
chr61550806815508170E0713479
chr61550824415508398E0713655
chr61550860315508722E0714014
chr61550875315509164E0714164
chr61550918015509415E0714591
chr61550962015509707E0715031
chr61551120215511278E0716613
chr61551156515511701E0716976
chr61552244715522561E07117858
chr61552273515522993E07118146
chr61553580615536098E07131217
chr61553614915536242E07131560
chr61553627415536386E07131685
chr61553904515539303E07134456
chr61554012915540237E07135540
chr61555108615551188E07146497
chr61555156315551928E07146974
chr61555200915552378E07147420
chr61545852415458711E072-45878
chr61545881515458895E072-45694
chr61546001615460070E072-44519
chr61546043515460675E072-43914
chr61546298115463667E072-40922
chr61546759415467749E072-36840
chr61547395615474388E072-30201
chr61547454515474705E072-29884
chr61547691315477046E072-27543
chr61547712315477457E072-27132
chr61547759415477642E072-26947
chr61548001915480370E072-24219
chr61548071815480768E072-23821
chr61548448815484598E072-19991
chr61549056515490729E072-13860
chr61549075215490811E072-13778
chr61549089715490947E072-13642
chr61549107315491177E072-13412
chr61549128515491342E072-13247
chr61549136615491456E072-13133
chr61549149115491979E072-12610
chr61549223815492288E072-12301
chr61549231015492383E072-12206
chr61550080615500871E072-3718
chr61550167615501794E072-2795
chr61550198815502050E072-2539
chr61550205715502653E072-1936
chr61550266615503566E072-1023
chr61550371515503779E072-810
chr61550388615504195E072-394
chr61550585215506202E0721263
chr61550918015509415E0724591
chr61550962015509707E0725031
chr61550995215510079E0725363
chr61551120215511278E0726613
chr61551156515511701E0726976
chr61551208315512278E0727494
chr61551250715512652E0727918
chr61552183415522184E07217245
chr61552244715522561E07217858
chr61552273515522993E07218146
chr61553904515539303E07234456
chr61555108615551188E07246497
chr61555156315551928E07246974
chr61555200915552378E07247420
chr61545819515458428E073-46161
chr61545852415458711E073-45878
chr61545881515458895E073-45694
chr61546001615460070E073-44519
chr61546043515460675E073-43914
chr61546298115463667E073-40922
chr61546981015469860E073-34729
chr61547652115476610E073-27979
chr61547664815476770E073-27819
chr61547691315477046E073-27543
chr61547712315477457E073-27132
chr61547759415477642E073-26947
chr61547779615477900E073-26689
chr61547812515478238E073-26351
chr61548001915480370E073-24219
chr61548071815480768E073-23821
chr61548954215489755E073-14834
chr61549149115491979E073-12610
chr61549223815492288E073-12301
chr61549231015492383E073-12206
chr61549248615492630E073-11959
chr61549279615492851E073-11738
chr61549557515496148E073-8441
chr61550167615501794E073-2795
chr61550198815502050E073-2539
chr61550205715502653E073-1936
chr61550266615503566E073-1023
chr61550371515503779E073-810
chr61550388615504195E073-394
chr61550585215506202E0731263
chr61550658515506625E0731996
chr61550860315508722E0734014
chr61550875315509164E0734164
chr61550918015509415E0734591
chr61550962015509707E0735031
chr61550995215510079E0735363
chr61551120215511278E0736613
chr61551156515511701E0736976
chr61551208315512278E0737494
chr61551421515514316E0739626
chr61551435815514408E0739769
chr61551477415514938E07310185
chr61552183415522184E07317245
chr61552244715522561E07317858
chr61553904515539303E07334456
chr61554995215550098E07345363
chr61555016115550260E07345572
chr61555108615551188E07346497
chr61555156315551928E07346974
chr61555200915552378E07347420
chr61545493615455041E074-49548
chr61545751815457568E074-47021
chr61545819515458428E074-46161
chr61545852415458711E074-45878
chr61545881515458895E074-45694
chr61546001615460070E074-44519
chr61546043515460675E074-43914
chr61546095315461033E074-43556
chr61546130615461612E074-42977
chr61546168715461762E074-42827
chr61546176415462015E074-42574
chr61546441415464457E074-40132
chr61546448215464556E074-40033
chr61546458615464784E074-39805
chr61546482715464895E074-39694
chr61546759415467749E074-36840
chr61547337815473428E074-31161
chr61547355815473730E074-30859
chr61547395615474388E074-30201
chr61547712315477457E074-27132
chr61547759415477642E074-26947
chr61548001915480370E074-24219
chr61548071815480768E074-23821
chr61548091015481065E074-23524
chr61548176215481971E074-22618
chr61548216915482518E074-22071
chr61548448815484598E074-19991
chr61549038515490501E074-14088
chr61549056515490729E074-13860
chr61549075215490811E074-13778
chr61549089715490947E074-13642
chr61549107315491177E074-13412
chr61549128515491342E074-13247
chr61549136615491456E074-13133
chr61549149115491979E074-12610
chr61549223815492288E074-12301
chr61549231015492383E074-12206
chr61550205715502653E074-1936
chr61550266615503566E074-1023
chr61550371515503779E074-810
chr61550388615504195E074-394
chr61550585215506202E0741263
chr61550658515506625E0741996
chr61550875315509164E0744164
chr61550918015509415E0744591
chr61550962015509707E0745031
chr61550995215510079E0745363
chr61551120215511278E0746613
chr61551156515511701E0746976
chr61551208315512278E0747494
chr61551250715512652E0747918
chr61552183415522184E07417245
chr61552244715522561E07417858
chr61552273515522993E07418146
chr61552785015527930E07423261
chr61553904515539303E07434456
chr61545819515458428E081-46161
chr61545852415458711E081-45878
chr61545881515458895E081-45694
chr61548001915480370E081-24219
chr61548176215481971E081-22618
chr61549136615491456E081-13133
chr61549149115491979E081-12610
chr61550198815502050E081-2539
chr61550205715502653E081-1936
chr61550266615503566E081-1023
chr61550371515503779E081-810
chr61550388615504195E081-394
chr61550585215506202E0811263
chr61545881515458895E082-45694
chr61548001915480370E082-24219
chr61548071815480768E082-23821