Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.133545407C>A |
GRCh37.p13 chr 3 | NC_000003.11:g.133264251C>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.355 | A=0.645 |
1000Genomes | American | Sub | 694 | C=0.310 | A=0.690 |
1000Genomes | East Asian | Sub | 1008 | C=0.133 | A=0.867 |
1000Genomes | Europe | Sub | 1006 | C=0.368 | A=0.632 |
1000Genomes | Global | Study-wide | 5008 | C=0.271 | A=0.729 |
1000Genomes | South Asian | Sub | 978 | C=0.170 | A=0.830 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.402 | A=0.598 |
The Genome Aggregation Database | African | Sub | 8718 | C=0.380 | A=0.620 |
The Genome Aggregation Database | American | Sub | 836 | C=0.260 | A=0.740 |
The Genome Aggregation Database | East Asian | Sub | 1622 | C=0.125 | A=0.875 |
The Genome Aggregation Database | Europe | Sub | 18482 | C=0.418 | A=0.581 |
The Genome Aggregation Database | Global | Study-wide | 29960 | C=0.387 | A=0.613 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.430 | A=0.570 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.379 | A=0.620 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.427 | A=0.573 |
PMID | Title | Author | Journal |
---|---|---|---|
21665994 | Genome-wide association study identifies two loci strongly affecting transferrin glycosylation. | Kutalik Z | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7614812 | 1.26E-08 | alcohol consumption | 21665994 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 133254911 | 133255817 | E067 | -8434 |
chr3 | 133297382 | 133297726 | E067 | 33131 |
chr3 | 133254911 | 133255817 | E068 | -8434 |
chr3 | 133254911 | 133255817 | E069 | -8434 |
chr3 | 133296654 | 133296726 | E069 | 32403 |
chr3 | 133296755 | 133296862 | E069 | 32504 |
chr3 | 133297034 | 133297084 | E069 | 32783 |
chr3 | 133297382 | 133297726 | E069 | 33131 |
chr3 | 133254911 | 133255817 | E070 | -8434 |
chr3 | 133297382 | 133297726 | E070 | 33131 |
chr3 | 133297382 | 133297726 | E071 | 33131 |
chr3 | 133289963 | 133290140 | E072 | 25712 |
chr3 | 133297382 | 133297726 | E072 | 33131 |
chr3 | 133296654 | 133296726 | E073 | 32403 |
chr3 | 133296755 | 133296862 | E073 | 32504 |
chr3 | 133297034 | 133297084 | E073 | 32783 |
chr3 | 133297382 | 133297726 | E073 | 33131 |
chr3 | 133314061 | 133314138 | E073 | 49810 |
chr3 | 133254911 | 133255817 | E074 | -8434 |
chr3 | 133296654 | 133296726 | E074 | 32403 |
chr3 | 133296755 | 133296862 | E074 | 32504 |
chr3 | 133297034 | 133297084 | E074 | 32783 |
chr3 | 133297382 | 133297726 | E074 | 33131 |
chr3 | 133296755 | 133296862 | E081 | 32504 |
chr3 | 133297034 | 133297084 | E081 | 32783 |
chr3 | 133297382 | 133297726 | E081 | 33131 |
chr3 | 133297382 | 133297726 | E082 | 33131 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 133291220 | 133294288 | E067 | 26969 |
chr3 | 133291220 | 133294288 | E068 | 26969 |
chr3 | 133291220 | 133294288 | E069 | 26969 |
chr3 | 133291220 | 133294288 | E070 | 26969 |
chr3 | 133294433 | 133294485 | E070 | 30182 |
chr3 | 133291220 | 133294288 | E071 | 26969 |
chr3 | 133294433 | 133294485 | E071 | 30182 |
chr3 | 133291220 | 133294288 | E072 | 26969 |
chr3 | 133291220 | 133294288 | E073 | 26969 |
chr3 | 133291220 | 133294288 | E074 | 26969 |
chr3 | 133291220 | 133294288 | E082 | 26969 |
chr3 | 133294433 | 133294485 | E082 | 30182 |