rs7615202

Homo sapiens
T>C
LINC00578 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0242 (7250/29940,GnomAD)
C=0235 (6854/29118,TOPMED)
C=0256 (1280/5008,1000G)
C=0243 (936/3854,ALSPAC)
C=0238 (882/3708,TWINSUK)
chr3:177505279 (GRCh38.p7) (3q26.32)
AD
GWASdb2
1   publication(s)
See rs on genome
180 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.177505279T>C
GRCh37.p13 chr 3NC_000003.11:g.177223067T>C

Gene: LINC00578, long intergenic non-protein coding RNA 578(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00578 transcriptNR_047568.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.812C=0.188
1000GenomesAmericanSub694T=0.650C=0.350
1000GenomesEast AsianSub1008T=0.766C=0.234
1000GenomesEuropeSub1006T=0.747C=0.253
1000GenomesGlobalStudy-wide5008T=0.744C=0.256
1000GenomesSouth AsianSub978T=0.700C=0.300
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.757C=0.243
The Genome Aggregation DatabaseAfricanSub8730T=0.796C=0.204
The Genome Aggregation DatabaseAmericanSub836T=0.630C=0.370
The Genome Aggregation DatabaseEast AsianSub1622T=0.768C=0.232
The Genome Aggregation DatabaseEuropeSub18452T=0.743C=0.257
The Genome Aggregation DatabaseGlobalStudy-wide29940T=0.757C=0.242
The Genome Aggregation DatabaseOtherSub300T=0.860C=0.140
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.764C=0.235
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.762C=0.238
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs76152020.00012alcohol consumption23743675

eQTL of rs7615202 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7615202 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3177176986177177116E067-45951
chr3177177169177178271E067-44796
chr3177191013177191100E067-31967
chr3177191132177191248E067-31819
chr3177201004177201737E067-21330
chr3177207940177208037E067-15030
chr3177208077177208645E067-14422
chr3177208649177210059E067-13008
chr3177230846177232651E0677779
chr3177232659177232910E0679592
chr3177232963177233194E0679896
chr3177233347177233411E06710280
chr3177233716177234983E06710649
chr3177255609177255685E06732542
chr3177255823177257393E06732756
chr3177270894177271065E06747827
chr3177271566177271620E06748499
chr3177176986177177116E068-45951
chr3177177169177178271E068-44796
chr3177178426177178747E068-44320
chr3177181703177181943E068-41124
chr3177182060177182219E068-40848
chr3177182307177182393E068-40674
chr3177190006177190100E068-32967
chr3177194295177194480E068-28587
chr3177194532177194648E068-28419
chr3177199878177200548E068-22519
chr3177216079177216561E068-6506
chr3177230846177232651E0687779
chr3177232659177232910E0689592
chr3177232963177233194E0689896
chr3177233347177233411E06810280
chr3177233716177234983E06810649
chr3177248279177248329E06825212
chr3177248608177249131E06825541
chr3177249155177249270E06826088
chr3177254055177254242E06830988
chr3177255609177255685E06832542
chr3177255823177257393E06832756
chr3177270501177270569E06847434
chr3177270894177271065E06847827
chr3177271566177271620E06848499
chr3177176815177176865E069-46202
chr3177176867177176920E069-46147
chr3177176986177177116E069-45951
chr3177177169177178271E069-44796
chr3177199878177200548E069-22519
chr3177216079177216561E069-6506
chr3177230846177232651E0697779
chr3177232659177232910E0699592
chr3177232963177233194E0699896
chr3177233347177233411E06910280
chr3177233716177234983E06910649
chr3177254055177254242E06930988
chr3177254544177254667E06931477
chr3177254843177254964E06931776
chr3177255609177255685E06932542
chr3177255823177257393E06932756
chr3177269728177269768E06946661
chr3177270501177270569E06947434
chr3177270894177271065E06947827
chr3177271566177271620E06948499
chr3177177169177178271E070-44796
chr3177208077177208645E070-14422
chr3177208649177210059E070-13008
chr3177230846177232651E0707779
chr3177232659177232910E0709592
chr3177232963177233194E0709896
chr3177233347177233411E07010280
chr3177233716177234983E07010649
chr3177176815177176865E071-46202
chr3177176867177176920E071-46147
chr3177176986177177116E071-45951
chr3177177169177178271E071-44796
chr3177178426177178747E071-44320
chr3177182753177182930E071-40137
chr3177183044177183134E071-39933
chr3177183141177183314E071-39753
chr3177187986177188272E071-34795
chr3177190006177190100E071-32967
chr3177191013177191100E071-31967
chr3177191132177191248E071-31819
chr3177199878177200548E071-22519
chr3177201004177201737E071-21330
chr3177207940177208037E071-15030
chr3177217639177218016E071-5051
chr3177218090177218243E071-4824
chr3177230846177232651E0717779
chr3177232659177232910E0719592
chr3177232963177233194E0719896
chr3177233347177233411E07110280
chr3177233716177234983E07110649
chr3177247562177247755E07124495
chr3177248279177248329E07125212
chr3177254055177254242E07130988
chr3177254843177254964E07131776
chr3177255609177255685E07132542
chr3177255823177257393E07132756
chr3177269279177269572E07146212
chr3177269728177269768E07146661
chr3177270501177270569E07147434
chr3177270894177271065E07147827
chr3177271566177271620E07148499
chr3177176815177176865E072-46202
chr3177176867177176920E072-46147
chr3177176986177177116E072-45951
chr3177177169177178271E072-44796
chr3177207940177208037E072-15030
chr3177228605177228658E0725538
chr3177230846177232651E0727779
chr3177232659177232910E0729592
chr3177232963177233194E0729896
chr3177233716177234983E07210649
chr3177235047177235139E07211980
chr3177254055177254242E07230988
chr3177254544177254667E07231477
chr3177254843177254964E07231776
chr3177255609177255685E07232542
chr3177255823177257393E07232756
chr3177257478177257528E07234411
chr3177257552177257602E07234485
chr3177270501177270569E07247434
chr3177270894177271065E07247827
chr3177271566177271620E07248499
chr3177177169177178271E073-44796
chr3177191013177191100E073-31967
chr3177191132177191248E073-31819
chr3177207940177208037E073-15030
chr3177208077177208645E073-14422
chr3177208649177210059E073-13008
chr3177230846177232651E0737779
chr3177232659177232910E0739592
chr3177232963177233194E0739896
chr3177233347177233411E07310280
chr3177233716177234983E07310649
chr3177254843177254964E07331776
chr3177255609177255685E07332542
chr3177255823177257393E07332756
chr3177270894177271065E07347827
chr3177271566177271620E07348499
chr3177176815177176865E074-46202
chr3177176867177176920E074-46147
chr3177176986177177116E074-45951
chr3177177169177178271E074-44796
chr3177199228177199329E074-23738
chr3177199878177200548E074-22519
chr3177201004177201737E074-21330
chr3177206857177206925E074-16142
chr3177207940177208037E074-15030
chr3177208077177208645E074-14422
chr3177217639177218016E074-5051
chr3177218090177218243E074-4824
chr3177230846177232651E0747779
chr3177232659177232910E0749592
chr3177232963177233194E0749896
chr3177233347177233411E07410280
chr3177233716177234983E07410649
chr3177248608177249131E07425541
chr3177254843177254964E07431776
chr3177255609177255685E07432542
chr3177255823177257393E07432756
chr3177259512177259640E07436445
chr3177270501177270569E07447434
chr3177270894177271065E07447827
chr3177271566177271620E07448499
chr3177177169177178271E081-44796
chr3177208649177210059E081-13008
chr3177230846177232651E0817779
chr3177232659177232910E0819592
chr3177232963177233194E0819896
chr3177233347177233411E08110280
chr3177233716177234983E08110649
chr3177186176177186478E082-36589
chr3177208077177208645E082-14422
chr3177208649177210059E082-13008
chr3177232659177232910E0829592
chr3177232963177233194E0829896
chr3177233716177234983E08210649
chr3177255823177257393E08232756
chr3177257478177257528E08234411