Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.51341117G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.51378548G>A |
DOCK3 RefSeqGene | NG_028012.1:g.670877G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
DOCK3 transcript | NM_004947.4:c. | N/A | Intron Variant |
DOCK3 transcript variant X1 | XM_005264914.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X2 | XM_005264915.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X3 | XM_005264916.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X4 | XM_005264917.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X8 | XM_005264918.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X5 | XM_006713008.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X6 | XM_006713009.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X10 | XM_006713010.3:c. | N/A | Intron Variant |
DOCK3 transcript variant X12 | XM_011533441.2:c. | N/A | Intron Variant |
DOCK3 transcript variant X13 | XM_011533443.2:c. | N/A | Intron Variant |
DOCK3 transcript variant X14 | XM_011533444.2:c. | N/A | Intron Variant |
DOCK3 transcript variant X15 | XM_011533445.2:c. | N/A | Intron Variant |
DOCK3 transcript variant X7 | XM_017005825.1:c. | N/A | Intron Variant |
DOCK3 transcript variant X9 | XM_017005826.1:c. | N/A | Intron Variant |
DOCK3 transcript variant X11 | XM_017005827.1:c. | N/A | Intron Variant |
DOCK3 transcript variant X16 | XM_017005828.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.840 | A=0.160 |
1000Genomes | American | Sub | 694 | G=0.980 | A=0.020 |
1000Genomes | East Asian | Sub | 1008 | G=1.000 | A=0.000 |
1000Genomes | Europe | Sub | 1006 | G=0.999 | A=0.001 |
1000Genomes | Global | Study-wide | 5008 | G=0.955 | A=0.045 |
1000Genomes | South Asian | Sub | 978 | G=1.000 | A=0.000 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.999 | A=0.001 |
The Genome Aggregation Database | African | Sub | 8720 | G=0.885 | A=0.115 |
The Genome Aggregation Database | American | Sub | 838 | G=0.990 | A=0.010 |
The Genome Aggregation Database | East Asian | Sub | 1620 | G=1.000 | A=0.000 |
The Genome Aggregation Database | Europe | Sub | 18488 | G=0.998 | A=0.001 |
The Genome Aggregation Database | Global | Study-wide | 29968 | G=0.965 | A=0.034 |
The Genome Aggregation Database | Other | Sub | 302 | G=1.000 | A=0.000 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.949 | A=0.050 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.999 | A=0.001 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7630259 | 0.000813 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 51377497 | 51377681 | E067 | -867 |
chr3 | 51377687 | 51378375 | E067 | -173 |
chr3 | 51378514 | 51378628 | E067 | 0 |
chr3 | 51377497 | 51377681 | E068 | -867 |
chr3 | 51377687 | 51378375 | E068 | -173 |
chr3 | 51378514 | 51378628 | E068 | 0 |
chr3 | 51420825 | 51420905 | E068 | 42277 |
chr3 | 51420926 | 51421007 | E068 | 42378 |
chr3 | 51424359 | 51424485 | E068 | 45811 |
chr3 | 51424933 | 51425169 | E068 | 46385 |
chr3 | 51425271 | 51425321 | E068 | 46723 |
chr3 | 51425636 | 51425715 | E068 | 47088 |
chr3 | 51427571 | 51427675 | E068 | 49023 |
chr3 | 51377497 | 51377681 | E069 | -867 |
chr3 | 51377687 | 51378375 | E069 | -173 |
chr3 | 51378514 | 51378628 | E069 | 0 |
chr3 | 51420825 | 51420905 | E069 | 42277 |
chr3 | 51420926 | 51421007 | E069 | 42378 |
chr3 | 51427571 | 51427675 | E069 | 49023 |
chr3 | 51420825 | 51420905 | E070 | 42277 |
chr3 | 51420926 | 51421007 | E070 | 42378 |
chr3 | 51424359 | 51424485 | E070 | 45811 |
chr3 | 51424933 | 51425169 | E070 | 46385 |
chr3 | 51377497 | 51377681 | E071 | -867 |
chr3 | 51377687 | 51378375 | E071 | -173 |
chr3 | 51378514 | 51378628 | E071 | 0 |
chr3 | 51424933 | 51425169 | E071 | 46385 |
chr3 | 51425271 | 51425321 | E071 | 46723 |
chr3 | 51425636 | 51425715 | E071 | 47088 |
chr3 | 51425837 | 51426520 | E071 | 47289 |
chr3 | 51426781 | 51427413 | E071 | 48233 |
chr3 | 51427571 | 51427675 | E071 | 49023 |
chr3 | 51377497 | 51377681 | E072 | -867 |
chr3 | 51377687 | 51378375 | E072 | -173 |
chr3 | 51378514 | 51378628 | E072 | 0 |
chr3 | 51392612 | 51392704 | E072 | 14064 |
chr3 | 51392968 | 51393061 | E072 | 14420 |
chr3 | 51424359 | 51424485 | E072 | 45811 |
chr3 | 51424933 | 51425169 | E072 | 46385 |
chr3 | 51425271 | 51425321 | E072 | 46723 |
chr3 | 51425636 | 51425715 | E072 | 47088 |
chr3 | 51425837 | 51426520 | E072 | 47289 |
chr3 | 51426781 | 51427413 | E072 | 48233 |
chr3 | 51427571 | 51427675 | E072 | 49023 |
chr3 | 51350393 | 51350655 | E073 | -27893 |
chr3 | 51351608 | 51351662 | E073 | -26886 |
chr3 | 51377497 | 51377681 | E073 | -867 |
chr3 | 51377687 | 51378375 | E073 | -173 |
chr3 | 51378514 | 51378628 | E073 | 0 |
chr3 | 51392612 | 51392704 | E073 | 14064 |
chr3 | 51424933 | 51425169 | E073 | 46385 |
chr3 | 51425271 | 51425321 | E073 | 46723 |
chr3 | 51425636 | 51425715 | E073 | 47088 |
chr3 | 51425837 | 51426520 | E073 | 47289 |
chr3 | 51426781 | 51427413 | E073 | 48233 |
chr3 | 51427571 | 51427675 | E073 | 49023 |
chr3 | 51371894 | 51371971 | E074 | -6577 |
chr3 | 51377497 | 51377681 | E074 | -867 |
chr3 | 51377687 | 51378375 | E074 | -173 |
chr3 | 51420825 | 51420905 | E074 | 42277 |
chr3 | 51420926 | 51421007 | E074 | 42378 |
chr3 | 51427571 | 51427675 | E074 | 49023 |
chr3 | 51420825 | 51420905 | E081 | 42277 |
chr3 | 51420926 | 51421007 | E081 | 42378 |
chr3 | 51424359 | 51424485 | E081 | 45811 |
chr3 | 51424933 | 51425169 | E081 | 46385 |
chr3 | 51425271 | 51425321 | E081 | 46723 |
chr3 | 51425636 | 51425715 | E081 | 47088 |
chr3 | 51420825 | 51420905 | E082 | 42277 |
chr3 | 51420926 | 51421007 | E082 | 42378 |
chr3 | 51425636 | 51425715 | E082 | 47088 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 51421612 | 51423442 | E067 | 43064 |
chr3 | 51421612 | 51423442 | E068 | 43064 |
chr3 | 51421612 | 51423442 | E069 | 43064 |
chr3 | 51421612 | 51423442 | E070 | 43064 |
chr3 | 51421612 | 51423442 | E071 | 43064 |
chr3 | 51421612 | 51423442 | E072 | 43064 |
chr3 | 51421612 | 51423442 | E073 | 43064 |
chr3 | 51421612 | 51423442 | E074 | 43064 |
chr3 | 51421612 | 51423442 | E081 | 43064 |
chr3 | 51421612 | 51423442 | E082 | 43064 |