SNP Detail Info-rs7636909

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

ATR : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0490 (14663/29872,GnomAD)
A==0450 (13119/29118,TOPMED)
G=0481 (2408/5008,1000G)
G=0437 (1685/3854,ALSPAC)
G=0443 (1641/3708,TWINSUK)

Position: chr3:142541720 (GRCh38.p7) (3q23)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 9 Enhancers around

Promoter: 9 Promoters around

Molecule type	Change	Amino acid[Codon]	SO Term
ATR transcript variant 1	NM_001184.3:c.	N/A	Intron Variant
ATR transcript variant X1	XM_011512924.1:c.	N/A	Intron Variant
ATR transcript variant X4	XM_011512925.1:c.	N/A	Intron Variant
ATR transcript variant X6	XM_011512926.2:c.	N/A	Intron Variant
ATR transcript variant X5	XM_017006643.1:c.	N/A	Intron Variant
ATR transcript variant X3	XR_001740179.1:n.	N/A	Intron Variant
ATR transcript variant X7	XR_001740180.1:n.	N/A	Intron Variant
ATR transcript variant X8	XR_001740181.1:n.	N/A	Intron Variant
ATR transcript variant X8	XR_001740182.1:n.	N/A	Intron Variant
ATR transcript variant X2	XR_924148.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.266	G=0.734
1000Genomes	American	Sub	694	A=0.610	G=0.390
1000Genomes	East Asian	Sub	1008	A=0.628	G=0.372
1000Genomes	Europe	Sub	1006	A=0.583	G=0.417
1000Genomes	Global	Study-wide	5008	A=0.519	G=0.481
1000Genomes	South Asian	Sub	978	A=0.620	G=0.380
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.563	G=0.437
The Genome Aggregation Database	African	Sub	8700	A=0.327	G=0.673
The Genome Aggregation Database	American	Sub	836	A=0.620	G=0.380
The Genome Aggregation Database	East Asian	Sub	1620	A=0.616	G=0.384
The Genome Aggregation Database	Europe	Sub	18414	A=0.581	G=0.419
The Genome Aggregation Database	Global	Study-wide	29872	A=0.509	G=0.490
The Genome Aggregation Database	Other	Sub	302	A=0.490	G=0.510
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.450	G=0.549
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.557	G=0.443

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs7636909	2.69E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	142294361	142294411	E068	33799
chr3	142284897	142285485	E069	24335
chr3	142284897	142285485	E071	24335
chr3	142293586	142293693	E071	33024
chr3	142295795	142295868	E071	35233
chr3	142298661	142298711	E071	38099
chr3	142298890	142298942	E071	38328
chr3	142295795	142295868	E072	35233
chr3	142298661	142298711	E081	38099

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr3	142296657	142298593	E067	36095
chr3	142296657	142298593	E068	36095
chr3	142296657	142298593	E069	36095
chr3	142296657	142298593	E070	36095
chr3	142296657	142298593	E071	36095
chr3	142296657	142298593	E072	36095
chr3	142296657	142298593	E073	36095
chr3	142296657	142298593	E074	36095
chr3	142296657	142298593	E082	36095

rs7636909