SNP Detail Info-rs7645282

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0200 (5992/29846,GnomAD)
G=0282 (8216/29118,TOPMED)
G=0221 (1106/5008,1000G)
G=0104 (401/3854,ALSPAC)
G=0108 (399/3708,TWINSUK)

Position: chr3:164842394 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164842394A>G
GRCh37.p13 chr 3	NC_000003.11:g.164560182A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.458	G=0.542
1000Genomes	American	Sub	694	A=0.900	G=0.100
1000Genomes	East Asian	Sub	1008	A=0.902	G=0.098
1000Genomes	Europe	Sub	1006	A=0.907	G=0.093
1000Genomes	Global	Study-wide	5008	A=0.779	G=0.221
1000Genomes	South Asian	Sub	978	A=0.870	G=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.896	G=0.104
The Genome Aggregation Database	African	Sub	8638	A=0.525	G=0.475
The Genome Aggregation Database	American	Sub	832	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1608	A=0.891	G=0.109
The Genome Aggregation Database	Europe	Sub	18466	A=0.911	G=0.088
The Genome Aggregation Database	Global	Study-wide	29846	A=0.799	G=0.200
The Genome Aggregation Database	Other	Sub	302	A=0.910	G=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.717	G=0.282
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.892	G=0.108

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs7645282	2.07E-08	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7645282