rs7647704

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0195 (5832/29824,GnomAD)
A=0271 (7902/29118,TOPMED)
A=0214 (1073/5008,1000G)
A=0104 (401/3854,ALSPAC)
A=0108 (399/3708,TWINSUK)
chr3:164842406 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164842406T>A
GRCh37.p13 chr 3NC_000003.11:g.164560194T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.483A=0.517
1000GenomesAmericanSub694T=0.900A=0.100
1000GenomesEast AsianSub1008T=0.902A=0.098
1000GenomesEuropeSub1006T=0.907A=0.093
1000GenomesGlobalStudy-wide5008T=0.786A=0.214
1000GenomesSouth AsianSub978T=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8636T=0.544A=0.456
The Genome Aggregation DatabaseAmericanSub830T=0.930A=0.070
The Genome Aggregation DatabaseEast AsianSub1604T=0.892A=0.108
The Genome Aggregation DatabaseEuropeSub18452T=0.911A=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29824T=0.804A=0.195
The Genome Aggregation DatabaseOtherSub302T=0.910A=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.728A=0.271
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.892A=0.108
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs76477042.07E-08alcohol dependence (age at onset)24962325

eQTL of rs7647704 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7647704 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.