rs7664882

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0457 (13648/29856,GnomAD)
A=0460 (13415/29118,TOPMED)
A=0450 (2253/5008,1000G)
A=0491 (1893/3854,ALSPAC)
T==0498 (1845/3708,TWINSUK)
chr4:35517734 (GRCh38.p7) (4p15.1)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
14 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.35517734T>A
GRCh37.p13 chr 4NC_000004.11:g.35519356T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.599A=0.401
1000GenomesAmericanSub694T=0.470A=0.530
1000GenomesEast AsianSub1008T=0.699A=0.301
1000GenomesEuropeSub1006T=0.535A=0.465
1000GenomesGlobalStudy-wide5008T=0.550A=0.450
1000GenomesSouth AsianSub978T=0.400A=0.600
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.509A=0.491
The Genome Aggregation DatabaseAfricanSub8704T=0.588A=0.412
The Genome Aggregation DatabaseAmericanSub834T=0.430A=0.570
The Genome Aggregation DatabaseEast AsianSub1612T=0.739A=0.261
The Genome Aggregation DatabaseEuropeSub18404T=0.508A=0.491
The Genome Aggregation DatabaseGlobalStudy-wide29856T=0.542A=0.457
The Genome Aggregation DatabaseOtherSub302T=0.580A=0.420
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.539A=0.460
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.498A=0.502
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs76648820.000273nicotine dependence17158188

eQTL of rs7664882 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7664882 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr43552673735526787E0747381
chr43553670135536912E08217345
chr43553699835537160E08217642


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr43552687235526986E0687516
chr43552703435527236E0687678
chr43552753335527608E0688177
chr43552687235526986E0697516
chr43552703435527236E0697678
chr43552687235526986E0717516
chr43552703435527236E0717678
chr43552753335527608E0718177
chr43552687235526986E0727516
chr43552703435527236E0727678
chr43552687235526986E0737516
chr43552703435527236E0737678
chr43552687235526986E0747516
chr43552703435527236E0747678