SNP Detail Info-rs7696494

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0202 (6054/29912,GnomAD)
A=0213 (6202/29118,TOPMED)
A=0138 (691/5008,1000G)
A=0184 (709/3854,ALSPAC)
A=0190 (703/3708,TWINSUK)

Position: chr4:94364023 (GRCh38.p7) (4q22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.94364023G>A
GRCh37.p13 chr 4	NC_000004.11:g.95285174G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.719	A=0.281
1000Genomes	American	Sub	694	G=0.860	A=0.140
1000Genomes	East Asian	Sub	1008	G=0.999	A=0.001
1000Genomes	Europe	Sub	1006	G=0.819	A=0.181
1000Genomes	Global	Study-wide	5008	G=0.862	A=0.138
1000Genomes	South Asian	Sub	978	G=0.960	A=0.040
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.816	A=0.184
The Genome Aggregation Database	African	Sub	8716	G=0.738	A=0.262
The Genome Aggregation Database	American	Sub	838	G=0.870	A=0.130
The Genome Aggregation Database	East Asian	Sub	1594	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18462	G=0.804	A=0.195
The Genome Aggregation Database	Global	Study-wide	29912	G=0.797	A=0.202
The Genome Aggregation Database	Other	Sub	302	G=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.787	A=0.213
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.810	A=0.190

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7696494	0.00096	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	95328332	95328498	E067	43158
chr4	95333442	95334438	E067	48268
chr4	95333442	95334438	E068	48268
chr4	95334503	95334602	E068	49329
chr4	95328332	95328498	E069	43158
chr4	95328332	95328498	E072	43158

rs7696494