| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.107785718A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.107121419A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.607 | G=0.393 |
| 1000Genomes | American | Sub | 694 | A=0.560 | G=0.440 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.377 | G=0.623 |
| 1000Genomes | Europe | Sub | 1006 | A=0.678 | G=0.322 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.561 | G=0.439 |
| 1000Genomes | South Asian | Sub | 978 | A=0.560 | G=0.440 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.662 | G=0.338 |
| The Genome Aggregation Database | African | Sub | 8704 | A=0.608 | G=0.392 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.560 | G=0.440 |
| The Genome Aggregation Database | East Asian | Sub | 1612 | A=0.370 | G=0.630 |
| The Genome Aggregation Database | Europe | Sub | 18482 | A=0.691 | G=0.308 |
| The Genome Aggregation Database | Global | Study-wide | 29938 | A=0.646 | G=0.353 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.710 | G=0.290 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.650 | G=0.350 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.669 | G=0.331 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 22072270 | Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms. | Wang KS | J Neural Transm (Vienna) |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs770172 | 6.52E-05 | alcohol withdrawal symptoms | 22072270 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 107140779 | 107141147 | E070 | 19360 |
| chr5 | 107141604 | 107141709 | E070 | 20185 |
| chr5 | 107142042 | 107142355 | E070 | 20623 |
| chr5 | 107144282 | 107144943 | E070 | 22863 |
| chr5 | 107170392 | 107170499 | E081 | 48973 |
| chr5 | 107170668 | 107171289 | E081 | 49249 |