| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.2549097A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.2549211A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.649 | G=0.351 |
| 1000Genomes | American | Sub | 694 | A=0.930 | G=0.070 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.827 | G=0.173 |
| 1000Genomes | Europe | Sub | 1006 | A=0.890 | G=0.110 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.801 | G=0.199 |
| 1000Genomes | South Asian | Sub | 978 | A=0.800 | G=0.200 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.908 | G=0.092 |
| The Genome Aggregation Database | African | Sub | 8712 | A=0.720 | G=0.280 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.940 | G=0.060 |
| The Genome Aggregation Database | East Asian | Sub | 1618 | A=0.834 | G=0.166 |
| The Genome Aggregation Database | Europe | Sub | 18494 | A=0.904 | G=0.095 |
| The Genome Aggregation Database | Global | Study-wide | 29964 | A=0.848 | G=0.151 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.900 | G=0.100 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.821 | G=0.178 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.914 | G=0.086 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs7702425 | 0.000836 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 2547062 | 2547368 | E070 | -1843 |
| chr5 | 2514729 | 2514794 | E081 | -34417 |
| chr5 | 2514940 | 2514990 | E081 | -34221 |
| chr5 | 2537152 | 2537699 | E081 | -11512 |
| chr5 | 2537776 | 2538098 | E081 | -11113 |
| chr5 | 2538276 | 2538669 | E081 | -10542 |
| chr5 | 2547062 | 2547368 | E082 | -1843 |