rs7706715

Homo sapiens
C>A / C>G
OSMR-AS1 : Intron Variant
LOC107986414 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0344 (10307/29914,GnomAD)
A=0339 (9887/29118,TOPMED)
A=0350 (1753/5008,1000G)
chr5:38792384 (GRCh38.p7) (5p13.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.38792384C>A
GRCh38.p7 chr 5NC_000005.10:g.38792384C>G
GRCh37.p13 chr 5NC_000005.9:g.38792486C>A
GRCh37.p13 chr 5NC_000005.9:g.38792486C>G

Gene: OSMR-AS1, OSMR antisense RNA 1 (head to head)(minus strand)

Molecule type Change Amino acid[Codon] SO Term
OSMR-AS1 transcriptNR_109951.1:n.N/AIntron Variant

Gene: LOC107986414, uncharacterized LOC107986414(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC107986414 transcriptXR_001742645.1:n....XR_001742645.1:n.195C>AC>ANon Coding Transcript Variant
LOC107986414 transcriptXR_001742645.1:n....XR_001742645.1:n.195C>GC>GNon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.675A=0.325
1000GenomesAmericanSub694C=0.490A=0.510
1000GenomesEast AsianSub1008C=0.790A=0.210
1000GenomesEuropeSub1006C=0.668A=0.332
1000GenomesGlobalStudy-wide5008C=0.650A=0.350
1000GenomesSouth AsianSub978C=0.570A=0.430
The Genome Aggregation DatabaseAfricanSub8700C=0.686A=0.314
The Genome Aggregation DatabaseAmericanSub836C=0.550A=0.450
The Genome Aggregation DatabaseEast AsianSub1606C=0.767A=0.233
The Genome Aggregation DatabaseEuropeSub18470C=0.635A=0.364
The Genome Aggregation DatabaseGlobalStudy-wide29914C=0.655A=0.344
The Genome Aggregation DatabaseOtherSub302C=0.680A=0.320
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.660A=0.339
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs77067154.62E-05alcohol consumption23953852

eQTL of rs7706715 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7706715 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.