Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.55715135G>A |
GRCh37.p13 chr 5 | NC_000005.9:g.55010963G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.730 | A=0.270 |
1000Genomes | American | Sub | 694 | G=0.960 | A=0.040 |
1000Genomes | East Asian | Sub | 1008 | G=0.962 | A=0.038 |
1000Genomes | Europe | Sub | 1006 | G=0.956 | A=0.044 |
1000Genomes | Global | Study-wide | 5008 | G=0.889 | A=0.111 |
1000Genomes | South Asian | Sub | 978 | G=0.910 | A=0.090 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.954 | A=0.046 |
The Genome Aggregation Database | African | Sub | 8718 | G=0.774 | A=0.226 |
The Genome Aggregation Database | American | Sub | 838 | G=0.950 | A=0.050 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.960 | A=0.040 |
The Genome Aggregation Database | Europe | Sub | 18496 | G=0.960 | A=0.039 |
The Genome Aggregation Database | Global | Study-wide | 29970 | G=0.904 | A=0.095 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.880 | A=0.120 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.876 | A=0.123 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.955 | A=0.045 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7707639 | 0.000504 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 54967926 | 54968020 | E067 | -42943 |
chr5 | 54968398 | 54969030 | E067 | -41933 |
chr5 | 54970995 | 54971215 | E067 | -39748 |
chr5 | 54971317 | 54971465 | E067 | -39498 |
chr5 | 54987037 | 54988015 | E067 | -22948 |
chr5 | 54967926 | 54968020 | E068 | -42943 |
chr5 | 54975614 | 54975700 | E068 | -35263 |
chr5 | 54975892 | 54975948 | E068 | -35015 |
chr5 | 54977306 | 54977409 | E068 | -33554 |
chr5 | 54987037 | 54988015 | E068 | -22948 |
chr5 | 54967926 | 54968020 | E069 | -42943 |
chr5 | 54968398 | 54969030 | E069 | -41933 |
chr5 | 54985783 | 54985865 | E069 | -25098 |
chr5 | 54987037 | 54988015 | E069 | -22948 |
chr5 | 54967926 | 54968020 | E071 | -42943 |
chr5 | 54968398 | 54969030 | E071 | -41933 |
chr5 | 54969152 | 54969221 | E071 | -41742 |
chr5 | 54975614 | 54975700 | E071 | -35263 |
chr5 | 54975892 | 54975948 | E071 | -35015 |
chr5 | 54976168 | 54976411 | E071 | -34552 |
chr5 | 54976507 | 54976846 | E071 | -34117 |
chr5 | 54977306 | 54977409 | E071 | -33554 |
chr5 | 54977685 | 54977799 | E071 | -33164 |
chr5 | 54978045 | 54978106 | E071 | -32857 |
chr5 | 54985783 | 54985865 | E071 | -25098 |
chr5 | 54986147 | 54986649 | E071 | -24314 |
chr5 | 54987037 | 54988015 | E071 | -22948 |
chr5 | 54997468 | 54997554 | E071 | -13409 |
chr5 | 54997712 | 54997833 | E071 | -13130 |
chr5 | 54967926 | 54968020 | E072 | -42943 |
chr5 | 54968398 | 54969030 | E072 | -41933 |
chr5 | 54976168 | 54976411 | E072 | -34552 |
chr5 | 54987037 | 54988015 | E072 | -22948 |
chr5 | 54968398 | 54969030 | E073 | -41933 |
chr5 | 54976168 | 54976411 | E073 | -34552 |
chr5 | 54976507 | 54976846 | E073 | -34117 |
chr5 | 54977306 | 54977409 | E073 | -33554 |
chr5 | 54967926 | 54968020 | E074 | -42943 |
chr5 | 54968398 | 54969030 | E074 | -41933 |
chr5 | 54969152 | 54969221 | E074 | -41742 |
chr5 | 54969395 | 54969475 | E074 | -41488 |
chr5 | 54970319 | 54970447 | E074 | -40516 |
chr5 | 54985783 | 54985865 | E074 | -25098 |
chr5 | 54986147 | 54986649 | E074 | -24314 |
chr5 | 54987037 | 54988015 | E074 | -22948 |
chr5 | 55020245 | 55020345 | E074 | 9282 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr5 | 55007204 | 55008870 | E067 | -2093 |
chr5 | 55007204 | 55008870 | E068 | -2093 |
chr5 | 55007204 | 55008870 | E069 | -2093 |
chr5 | 55007204 | 55008870 | E070 | -2093 |
chr5 | 55007204 | 55008870 | E071 | -2093 |
chr5 | 55007204 | 55008870 | E072 | -2093 |
chr5 | 55007204 | 55008870 | E073 | -2093 |
chr5 | 55007204 | 55008870 | E074 | -2093 |
chr5 | 55007204 | 55008870 | E081 | -2093 |
chr5 | 55007204 | 55008870 | E082 | -2093 |