| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.50450489A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.49746323A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.492 | G=0.508 |
| 1000Genomes | American | Sub | 694 | A=0.670 | G=0.330 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.526 | G=0.474 |
| 1000Genomes | Europe | Sub | 1006 | A=0.670 | G=0.330 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.588 | G=0.412 |
| 1000Genomes | South Asian | Sub | 978 | A=0.640 | G=0.360 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.637 | G=0.363 |
| The Genome Aggregation Database | African | Sub | 8690 | A=0.479 | G=0.521 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.660 | G=0.340 |
| The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.486 | G=0.514 |
| The Genome Aggregation Database | Europe | Sub | 18436 | A=0.675 | G=0.324 |
| The Genome Aggregation Database | Global | Study-wide | 29874 | A=0.608 | G=0.391 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.680 | G=0.320 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.577 | G=0.422 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.636 | G=0.364 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs7720960 | 0.0000728 | alcoholism | pha002891 |
| rs7720960 | 0.0000728 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg15950743 | chr5:49708521 | EMB | -0.08883063749868 | 1.0654e-35 |
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr5 | 49736390 | 49737792 | E067 | -8531 |
| chr5 | 49736390 | 49737792 | E068 | -8531 |
| chr5 | 49736390 | 49737792 | E069 | -8531 |
| chr5 | 49735853 | 49736086 | E071 | -10237 |
| chr5 | 49736121 | 49736295 | E071 | -10028 |
| chr5 | 49736390 | 49737792 | E071 | -8531 |
| chr5 | 49735853 | 49736086 | E072 | -10237 |
| chr5 | 49736121 | 49736295 | E072 | -10028 |
| chr5 | 49736390 | 49737792 | E072 | -8531 |
| chr5 | 49736390 | 49737792 | E073 | -8531 |
| chr5 | 49736390 | 49737792 | E082 | -8531 |