Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.159223806C>T |
GRCh37.p13 chr 5 | NC_000005.9:g.158650814C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.192 | T=0.808 |
1000Genomes | American | Sub | 694 | C=0.410 | T=0.590 |
1000Genomes | East Asian | Sub | 1008 | C=0.551 | T=0.449 |
1000Genomes | Europe | Sub | 1006 | C=0.564 | T=0.436 |
1000Genomes | Global | Study-wide | 5008 | C=0.412 | T=0.588 |
1000Genomes | South Asian | Sub | 978 | C=0.410 | T=0.590 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.546 | T=0.454 |
The Genome Aggregation Database | African | Sub | 8700 | C=0.244 | T=0.756 |
The Genome Aggregation Database | American | Sub | 834 | C=0.440 | T=0.560 |
The Genome Aggregation Database | East Asian | Sub | 1606 | C=0.588 | T=0.412 |
The Genome Aggregation Database | Europe | Sub | 18462 | C=0.556 | T=0.443 |
The Genome Aggregation Database | Global | Study-wide | 29904 | C=0.463 | T=0.536 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.530 | T=0.470 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.393 | T=0.606 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.539 | T=0.461 |
PMID | Title | Author | Journal |
---|---|---|---|
17236132 | A large-scale genetic association study confirms IL12B and leads to the identification of IL23R as psoriasis-risk genes. | Cargill M | Am J Hum Genet |
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7721001 | 0.000676 | alcohol dependence | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 158691749 | 158691799 | E067 | 40935 |
chr5 | 158601873 | 158602051 | E068 | -48763 |
chr5 | 158602300 | 158602373 | E068 | -48441 |
chr5 | 158602601 | 158602899 | E068 | -47915 |
chr5 | 158611064 | 158611137 | E068 | -39677 |
chr5 | 158632035 | 158632085 | E068 | -18729 |
chr5 | 158631376 | 158631426 | E069 | -19388 |
chr5 | 158631376 | 158631426 | E070 | -19388 |
chr5 | 158632035 | 158632085 | E070 | -18729 |
chr5 | 158663079 | 158663121 | E070 | 12265 |
chr5 | 158609717 | 158610203 | E071 | -40611 |
chr5 | 158610393 | 158610505 | E071 | -40309 |
chr5 | 158631376 | 158631426 | E071 | -19388 |
chr5 | 158631376 | 158631426 | E072 | -19388 |
chr5 | 158691749 | 158691799 | E073 | 40935 |
chr5 | 158632035 | 158632085 | E082 | -18729 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr5 | 158634362 | 158638281 | E067 | -12533 |
chr5 | 158689449 | 158690909 | E067 | 38635 |
chr5 | 158634362 | 158638281 | E068 | -12533 |
chr5 | 158689449 | 158690909 | E068 | 38635 |
chr5 | 158634362 | 158638281 | E069 | -12533 |
chr5 | 158689449 | 158690909 | E069 | 38635 |
chr5 | 158634362 | 158638281 | E070 | -12533 |
chr5 | 158689449 | 158690909 | E070 | 38635 |
chr5 | 158634362 | 158638281 | E071 | -12533 |
chr5 | 158689449 | 158690909 | E071 | 38635 |
chr5 | 158634362 | 158638281 | E072 | -12533 |
chr5 | 158689449 | 158690909 | E072 | 38635 |
chr5 | 158634362 | 158638281 | E073 | -12533 |
chr5 | 158689449 | 158690909 | E073 | 38635 |
chr5 | 158634362 | 158638281 | E074 | -12533 |
chr5 | 158689449 | 158690909 | E074 | 38635 |
chr5 | 158634362 | 158638281 | E081 | -12533 |
chr5 | 158634362 | 158638281 | E082 | -12533 |
chr5 | 158689449 | 158690909 | E082 | 38635 |