Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.142135999C>T |
GRCh37.p13 chr 5 | NC_000005.9:g.141515564C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
NDFIP1 transcript | NM_030571.3:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.194 | T=0.806 |
1000Genomes | American | Sub | 694 | C=0.310 | T=0.690 |
1000Genomes | East Asian | Sub | 1008 | C=0.367 | T=0.633 |
1000Genomes | Europe | Sub | 1006 | C=0.380 | T=0.620 |
1000Genomes | Global | Study-wide | 5008 | C=0.334 | T=0.666 |
1000Genomes | South Asian | Sub | 978 | C=0.460 | T=0.540 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.387 | T=0.613 |
The Genome Aggregation Database | African | Sub | 8694 | C=0.229 | T=0.771 |
The Genome Aggregation Database | American | Sub | 836 | C=0.310 | T=0.690 |
The Genome Aggregation Database | East Asian | Sub | 1614 | C=0.350 | T=0.650 |
The Genome Aggregation Database | Europe | Sub | 18476 | C=0.373 | T=0.626 |
The Genome Aggregation Database | Global | Study-wide | 29920 | C=0.327 | T=0.672 |
The Genome Aggregation Database | Other | Sub | 300 | C=0.280 | T=0.720 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.308 | T=0.691 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.381 | T=0.619 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7733850 | 0.000537 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value |
---|---|---|---|---|
cg07392085 | chr5:141489673 | NDFIP1 | -0.0332937721107096 | 1.1316e-10 |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 141487642 | 141487707 | E067 | -27857 |
chr5 | 141500239 | 141500327 | E067 | -15237 |
chr5 | 141500451 | 141500501 | E067 | -15063 |
chr5 | 141507676 | 141507760 | E067 | -7804 |
chr5 | 141508433 | 141508671 | E067 | -6893 |
chr5 | 141524844 | 141525300 | E067 | 9280 |
chr5 | 141525374 | 141525437 | E067 | 9810 |
chr5 | 141546384 | 141546452 | E067 | 30820 |
chr5 | 141494472 | 141494553 | E068 | -21011 |
chr5 | 141495582 | 141495765 | E068 | -19799 |
chr5 | 141495983 | 141496059 | E068 | -19505 |
chr5 | 141508433 | 141508671 | E068 | -6893 |
chr5 | 141508902 | 141508952 | E068 | -6612 |
chr5 | 141524844 | 141525300 | E068 | 9280 |
chr5 | 141525374 | 141525437 | E068 | 9810 |
chr5 | 141487642 | 141487707 | E069 | -27857 |
chr5 | 141492438 | 141492491 | E069 | -23073 |
chr5 | 141492653 | 141492760 | E069 | -22804 |
chr5 | 141494472 | 141494553 | E069 | -21011 |
chr5 | 141497314 | 141497741 | E069 | -17823 |
chr5 | 141499989 | 141500071 | E069 | -15493 |
chr5 | 141500239 | 141500327 | E069 | -15237 |
chr5 | 141500451 | 141500501 | E069 | -15063 |
chr5 | 141501853 | 141501920 | E069 | -13644 |
chr5 | 141507676 | 141507760 | E069 | -7804 |
chr5 | 141508902 | 141508952 | E069 | -6612 |
chr5 | 141524844 | 141525300 | E069 | 9280 |
chr5 | 141536434 | 141536602 | E069 | 20870 |
chr5 | 141536645 | 141536984 | E069 | 21081 |
chr5 | 141546384 | 141546452 | E069 | 30820 |
chr5 | 141500451 | 141500501 | E070 | -15063 |
chr5 | 141487642 | 141487707 | E071 | -27857 |
chr5 | 141495582 | 141495765 | E071 | -19799 |
chr5 | 141497314 | 141497741 | E071 | -17823 |
chr5 | 141497905 | 141497989 | E071 | -17575 |
chr5 | 141498114 | 141498323 | E071 | -17241 |
chr5 | 141500239 | 141500327 | E071 | -15237 |
chr5 | 141500451 | 141500501 | E071 | -15063 |
chr5 | 141501853 | 141501920 | E071 | -13644 |
chr5 | 141506900 | 141507129 | E071 | -8435 |
chr5 | 141507676 | 141507760 | E071 | -7804 |
chr5 | 141508433 | 141508671 | E071 | -6893 |
chr5 | 141536434 | 141536602 | E071 | 20870 |
chr5 | 141536645 | 141536984 | E071 | 21081 |
chr5 | 141546384 | 141546452 | E071 | 30820 |
chr5 | 141487642 | 141487707 | E072 | -27857 |
chr5 | 141495582 | 141495765 | E072 | -19799 |
chr5 | 141497905 | 141497989 | E072 | -17575 |
chr5 | 141498114 | 141498323 | E072 | -17241 |
chr5 | 141498690 | 141498908 | E072 | -16656 |
chr5 | 141506900 | 141507129 | E072 | -8435 |
chr5 | 141507676 | 141507760 | E072 | -7804 |
chr5 | 141508902 | 141508952 | E072 | -6612 |
chr5 | 141536434 | 141536602 | E072 | 20870 |
chr5 | 141536645 | 141536984 | E072 | 21081 |
chr5 | 141546384 | 141546452 | E072 | 30820 |
chr5 | 141494472 | 141494553 | E073 | -21011 |
chr5 | 141495582 | 141495765 | E073 | -19799 |
chr5 | 141495983 | 141496059 | E073 | -19505 |
chr5 | 141498114 | 141498323 | E073 | -17241 |
chr5 | 141498690 | 141498908 | E073 | -16656 |
chr5 | 141500239 | 141500327 | E073 | -15237 |
chr5 | 141500451 | 141500501 | E073 | -15063 |
chr5 | 141506900 | 141507129 | E073 | -8435 |
chr5 | 141507676 | 141507760 | E073 | -7804 |
chr5 | 141508902 | 141508952 | E073 | -6612 |
chr5 | 141487642 | 141487707 | E074 | -27857 |
chr5 | 141494472 | 141494553 | E074 | -21011 |
chr5 | 141497314 | 141497741 | E074 | -17823 |
chr5 | 141497905 | 141497989 | E074 | -17575 |
chr5 | 141498114 | 141498323 | E074 | -17241 |
chr5 | 141498690 | 141498908 | E074 | -16656 |
chr5 | 141506900 | 141507129 | E074 | -8435 |
chr5 | 141507676 | 141507760 | E074 | -7804 |
chr5 | 141508433 | 141508671 | E074 | -6893 |
chr5 | 141508902 | 141508952 | E074 | -6612 |
chr5 | 141525374 | 141525437 | E074 | 9810 |
chr5 | 141525797 | 141525946 | E074 | 10233 |
chr5 | 141546384 | 141546452 | E074 | 30820 |
chr5 | 141486750 | 141486865 | E081 | -28699 |
chr5 | 141487055 | 141487620 | E081 | -27944 |
chr5 | 141487642 | 141487707 | E081 | -27857 |
chr5 | 141532042 | 141532287 | E081 | 16478 |
chr5 | 141535529 | 141535624 | E081 | 19965 |
chr5 | 141536434 | 141536602 | E081 | 20870 |
chr5 | 141536645 | 141536984 | E081 | 21081 |
chr5 | 141548955 | 141549526 | E081 | 33391 |
chr5 | 141487055 | 141487620 | E082 | -27944 |
chr5 | 141507676 | 141507760 | E082 | -7804 |
chr5 | 141536434 | 141536602 | E082 | 20870 |
chr5 | 141536645 | 141536984 | E082 | 21081 |
chr5 | 141540701 | 141540800 | E082 | 25137 |
chr5 | 141540875 | 141541088 | E082 | 25311 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr5 | 141487834 | 141490107 | E067 | -25457 |
chr5 | 141487834 | 141490107 | E068 | -25457 |
chr5 | 141487834 | 141490107 | E069 | -25457 |
chr5 | 141487834 | 141490107 | E070 | -25457 |
chr5 | 141487834 | 141490107 | E071 | -25457 |
chr5 | 141487834 | 141490107 | E072 | -25457 |
chr5 | 141487834 | 141490107 | E073 | -25457 |
chr5 | 141487834 | 141490107 | E074 | -25457 |
chr5 | 141487834 | 141490107 | E081 | -25457 |
chr5 | 141487834 | 141490107 | E082 | -25457 |