SNP Detail Info-rs7772742

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0069 (2086/29932,GnomAD)
A=0059 (1718/29118,TOPMED)
A=0058 (292/5008,1000G)
A=0052 (201/3854,ALSPAC)
A=0048 (179/3708,TWINSUK)

Position: chr6:9314121 (GRCh38.p7) (6p24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.9314121G>A
GRCh37.p13 chr 6	NC_000006.11:g.9314354G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.889	A=0.111
1000Genomes	American	Sub	694	G=0.970	A=0.030
1000Genomes	East Asian	Sub	1008	G=0.997	A=0.003
1000Genomes	Europe	Sub	1006	G=0.949	A=0.051
1000Genomes	Global	Study-wide	5008	G=0.942	A=0.058
1000Genomes	South Asian	Sub	978	G=0.930	A=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.948	A=0.052
The Genome Aggregation Database	African	Sub	8730	G=0.915	A=0.085
The Genome Aggregation Database	American	Sub	838	G=0.980	A=0.020
The Genome Aggregation Database	East Asian	Sub	1600	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18462	G=0.929	A=0.070
The Genome Aggregation Database	Global	Study-wide	29932	G=0.930	A=0.069
The Genome Aggregation Database	Other	Sub	302	G=0.930	A=0.070
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.941	A=0.059
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.952	A=0.048

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7772742	0.000745	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	9322640	9322822	E081	8286
chr6	9322874	9322928	E081	8520

rs7772742