rs7775575

Homo sapiens
C>T
LOC101928516 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0234 (7032/29946,GnomAD)
C==0230 (6709/29118,TOPMED)
C==0205 (1028/5008,1000G)
C==0273 (1053/3854,ALSPAC)
C==0292 (1081/3708,TWINSUK)
chr6:74148740 (GRCh38.p7) (6q13)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.74148740C>T
GRCh37.p13 chr 6NC_000006.11:g.74858456C>T

Gene: LOC101928516, uncharacterized LOC101928516(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101928516 transcriptNR_110856.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.173T=0.827
1000GenomesAmericanSub694C=0.250T=0.750
1000GenomesEast AsianSub1008C=0.183T=0.817
1000GenomesEuropeSub1006C=0.235T=0.765
1000GenomesGlobalStudy-wide5008C=0.205T=0.795
1000GenomesSouth AsianSub978C=0.210T=0.790
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.273T=0.727
The Genome Aggregation DatabaseAfricanSub8724C=0.185T=0.815
The Genome Aggregation DatabaseAmericanSub838C=0.270T=0.730
The Genome Aggregation DatabaseEast AsianSub1602C=0.165T=0.835
The Genome Aggregation DatabaseEuropeSub18480C=0.262T=0.737
The Genome Aggregation DatabaseGlobalStudy-wide29946C=0.234T=0.765
The Genome Aggregation DatabaseOtherSub302C=0.240T=0.760
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.230T=0.769
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.292T=0.708
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs77755753.9E-05alcoholism (heaviness of drinking)21529783

eQTL of rs7775575 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7775575 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.