rs7794978

Homo sapiens
C>A / C>T
LAMB4 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0031 (936/29954,GnomAD)
A=0048 (1411/29118,TOPMED)
A=0038 (189/5008,1000G)
A=0000 (1/3854,ALSPAC)
A=0001 (2/3708,TWINSUK)
chr7:108124785 (GRCh38.p7) (7q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.108124785C>A
GRCh38.p7 chr 7NC_000007.14:g.108124785C>T
GRCh37.p13 chr 7NC_000007.13:g.107765230C>A
GRCh37.p13 chr 7NC_000007.13:g.107765230C>T

Gene: LAMB4, laminin subunit beta 4(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LAMB4 transcript variant 2NM_001318046.1:c.N/AIntron Variant
LAMB4 transcript variant 3NM_001318047.1:c.N/AIntron Variant
LAMB4 transcript variant 4NM_001318048.1:c.N/AIntron Variant
LAMB4 transcript variant 1NM_007356.2:c.N/AIntron Variant
LAMB4 transcript variant X1XM_011515975.1:c.N/AIntron Variant
LAMB4 transcript variant X3XM_011515978.1:c.N/AIntron Variant
LAMB4 transcript variant X6XM_011515979.2:c.N/AIntron Variant
LAMB4 transcript variant X8XM_011515980.2:c.N/AIntron Variant
LAMB4 transcript variant X2XM_017011879.1:c.N/AIntron Variant
LAMB4 transcript variant X7XM_017011880.1:c.N/AIntron Variant
LAMB4 transcript variant X4XR_927421.1:n.N/AIntron Variant
LAMB4 transcript variant X5XR_927422.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.862A=0.138
1000GenomesAmericanSub694C=0.990A=0.010
1000GenomesEast AsianSub1008C=1.000A=0.000
1000GenomesEuropeSub1006C=1.000A=0.000
1000GenomesGlobalStudy-wide5008C=0.962A=0.038
1000GenomesSouth AsianSub978C=1.000A=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=1.000A=0.000
The Genome Aggregation DatabaseAfricanSub8708C=0.895A=0.105
The Genome Aggregation DatabaseAmericanSub836C=0.990A=0.01,
The Genome Aggregation DatabaseEast AsianSub1618C=0.999A=0.000
The Genome Aggregation DatabaseEuropeSub18490C=0.999A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.968A=0.031
The Genome Aggregation DatabaseOtherSub302C=1.000A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.951A=0.048
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.999A=0.001
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs77949780.000167alcohol dependence21314694

eQTL of rs7794978 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7794978 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr76923430669234584E067-43962
chr76923468969234739E067-43807
chr76923474769234807E067-43739
chr76924539569245776E067-32770
chr76924589769245947E067-32599
chr76924599569246049E067-32497
chr76924615569246205E067-32341
chr76924637769246831E067-31715
chr76924795869248925E067-29621
chr76924901069249050E067-29496
chr76924929169249464E067-29082
chr76926978469269981E067-8565
chr76927006769270240E067-8306
chr76927025269270375E067-8171
chr76927751969278350E067-196
chr76927858969279189E06743
chr76927926469279392E067718
chr76927941169279940E067865
chr76928134269281424E0672796
chr76928144269281747E0672896
chr76928182969281985E0673283
chr76928207769282599E0673531
chr76928266169282801E0674115
chr76928292869283129E0674382
chr76928316069283354E0674614
chr76928336769283423E0674821
chr76928355769283680E0675011
chr76928393169284101E0675385
chr76928410969284350E0675563
chr76928438269284877E0675836
chr76928812069288687E0679574
chr76928934569290895E06710799
chr76929130869291428E06712762
chr76930451369304573E06725967
chr76930460369304752E06726057
chr76930481169304970E06726265
chr76930499669305311E06726450
chr76930532969305492E06726783
chr76930602269306072E06727476
chr76930624769306370E06727701
chr76930638069306514E06727834
chr76930658969306639E06728043
chr76923400969234261E068-44285
chr76923430669234584E068-43962
chr76923468969234739E068-43807
chr76923474769234807E068-43739
chr76924589769245947E068-32599
chr76924599569246049E068-32497
chr76924615569246205E068-32341
chr76924795869248925E068-29621
chr76924901069249050E068-29496
chr76924929169249464E068-29082
chr76925272369252773E068-25773
chr76925284769253078E068-25468
chr76925313769253448E068-25098
chr76925357969253652E068-24894
chr76925365369253703E068-24843
chr76925581069255891E068-22655
chr76925597869256099E068-22447
chr76925615269256331E068-22215
chr76925644469256498E068-22048
chr76925680269256978E068-21568
chr76927858969279189E06843
chr76928182969281985E0683283
chr76928207769282599E0683531
chr76928266169282801E0684115
chr76928292869283129E0684382
chr76928316069283354E0684614
chr76928336769283423E0684821
chr76928355769283680E0685011
chr76928393169284101E0685385
chr76928410969284350E0685563
chr76928438269284877E0685836
chr76928754569287658E0688999
chr76928774269287936E0689196
chr76928812069288687E0689574
chr76928934569290895E06810799
chr76929628269296481E06817736
chr76930460369304752E06826057
chr76930481169304970E06826265
chr76930499669305311E06826450
chr76930532969305492E06826783
chr76931081269311025E06832266
chr76923400969234261E069-44285
chr76923430669234584E069-43962
chr76923468969234739E069-43807
chr76923474769234807E069-43739
chr76924589769245947E069-32599
chr76924599569246049E069-32497
chr76924615569246205E069-32341
chr76924637769246831E069-31715
chr76924685469247039E069-31507
chr76924795869248925E069-29621
chr76924901069249050E069-29496
chr76924929169249464E069-29082
chr76925272369252773E069-25773
chr76925284769253078E069-25468
chr76925313769253448E069-25098
chr76925357969253652E069-24894
chr76925581069255891E069-22655
chr76925597869256099E069-22447
chr76925615269256331E069-22215
chr76925644469256498E069-22048
chr76925680269256978E069-21568
chr76927858969279189E06943
chr76928207769282599E0693531
chr76928266169282801E0694115
chr76928292869283129E0694382
chr76928316069283354E0694614
chr76928336769283423E0694821
chr76928355769283680E0695011
chr76928393169284101E0695385
chr76928410969284350E0695563
chr76928438269284877E0695836
chr76928754569287658E0698999
chr76928774269287936E0699196
chr76928934569290895E06910799
chr76930282869302936E06924282
chr76930460369304752E06926057
chr76930481169304970E06926265
chr76930499669305311E06926450
chr76930532969305492E06926783
chr76930602269306072E06927476
chr76923400969234261E070-44285
chr76923430669234584E070-43962
chr76923468969234739E070-43807
chr76923474769234807E070-43739
chr76923501469235064E070-43482
chr76923519269235284E070-43262
chr76923547269235512E070-43034
chr76923568969235741E070-42805
chr76923802469238417E070-40129
chr76923842969238547E070-39999
chr76923856669239126E070-39420
chr76924539569245776E070-32770
chr76924589769245947E070-32599
chr76924599569246049E070-32497
chr76924615569246205E070-32341
chr76924637769246831E070-31715
chr76924685469247039E070-31507
chr76924713869247188E070-31358
chr76924727769247327E070-31219
chr76924738769247437E070-31109
chr76924748969247568E070-30978
chr76924768869247928E070-30618
chr76924795869248925E070-29621
chr76924901069249050E070-29496
chr76924929169249464E070-29082
chr76925029669250854E070-27692
chr76925272369252773E070-25773
chr76925284769253078E070-25468
chr76925313769253448E070-25098
chr76925357969253652E070-24894
chr76925365369253703E070-24843
chr76925581069255891E070-22655
chr76925597869256099E070-22447
chr76925615269256331E070-22215
chr76925644469256498E070-22048
chr76925680269256978E070-21568
chr76926609169266173E070-12373
chr76927858969279189E07043
chr76927926469279392E070718
chr76928013469280207E0701588
chr76928031769280367E0701771
chr76928083769281178E0702291
chr76928119069281240E0702644
chr76928182969281985E0703283
chr76928207769282599E0703531
chr76928266169282801E0704115
chr76928355769283680E0705011
chr76928393169284101E0705385
chr76928410969284350E0705563
chr76928438269284877E0705836
chr76928506969285119E0706523
chr76928515569285243E0706609
chr76928536169285411E0706815
chr76928562069285797E0707074
chr76928812069288687E0709574
chr76928934569290895E07010799
chr76929091569290985E07012369
chr76929130869291428E07012762
chr76930230069302763E07023754
chr76930282869302936E07024282
chr76930404769304108E07025501
chr76930413269304192E07025586
chr76930451369304573E07025967
chr76930460369304752E07026057
chr76930481169304970E07026265
chr76930499669305311E07026450
chr76930532969305492E07026783
chr76930602269306072E07027476
chr76930624769306370E07027701
chr76930638069306514E07027834
chr76930658969306639E07028043
chr76931039069310440E07031844
chr76931269169312745E07034145
chr76931279369312913E07034247
chr76931293669312986E07034390
chr76931302469313147E07034478
chr76931321069313449E07034664
chr76931347769313730E07034931
chr76932125569321346E07042709
chr76932181669321904E07043270
chr76932216369322366E07043617
chr76932600969326071E07047463
chr76932607569326118E07047529
chr76932639269326447E07047846
chr76932750069327607E07048954
chr76932769669327872E07049150
chr76932789569327997E07049349
chr76932839169328451E07049845
chr76923400969234261E071-44285
chr76923430669234584E071-43962
chr76923842969238547E071-39999
chr76923856669239126E071-39420
chr76924615569246205E071-32341
chr76924637769246831E071-31715
chr76924768869247928E071-30618
chr76924795869248925E071-29621
chr76924901069249050E071-29496
chr76924929169249464E071-29082
chr76925284769253078E071-25468
chr76925313769253448E071-25098
chr76925357969253652E071-24894
chr76925365369253703E071-24843
chr76925384369253959E071-24587
chr76925402369254231E071-24315
chr76925431169254389E071-24157
chr76925452269254674E071-23872
chr76925472469254803E071-23743
chr76925485469255024E071-23522
chr76925532269255372E071-23174
chr76925581069255891E071-22655
chr76925597869256099E071-22447
chr76925615269256331E071-22215
chr76925644469256498E071-22048
chr76925680269256978E071-21568
chr76927388069273930E071-4616
chr76927751969278350E071-196
chr76927858969279189E07143
chr76928013469280207E0711588
chr76928134269281424E0712796
chr76928144269281747E0712896
chr76928182969281985E0713283
chr76928207769282599E0713531
chr76928266169282801E0714115
chr76928292869283129E0714382
chr76928316069283354E0714614
chr76928336769283423E0714821
chr76928355769283680E0715011
chr76928393169284101E0715385
chr76928410969284350E0715563
chr76928438269284877E0715836
chr76928754569287658E0718999
chr76928774269287936E0719196
chr76928812069288687E0719574
chr76928934569290895E07110799
chr76929091569290985E07112369
chr76929628269296481E07117736
chr76929686969296985E07118323
chr76929702769297143E07118481
chr76930230069302763E07123754
chr76930282869302936E07124282
chr76930460369304752E07126057
chr76930481169304970E07126265
chr76930499669305311E07126450
chr76930532969305492E07126783
chr76930602269306072E07127476
chr76930624769306370E07127701
chr76930638069306514E07127834
chr76930658969306639E07128043
chr76930885169308996E07130305
chr76931039069310440E07131844
chr76931081269311025E07132266
chr76931321069313449E07134664
chr76931347769313730E07134931
chr76923400969234261E072-44285
chr76923430669234584E072-43962
chr76923468969234739E072-43807
chr76923474769234807E072-43739
chr76923856669239126E072-39420
chr76924589769245947E072-32599
chr76924599569246049E072-32497
chr76924615569246205E072-32341
chr76924637769246831E072-31715
chr76924685469247039E072-31507
chr76924795869248925E072-29621
chr76924901069249050E072-29496
chr76925284769253078E072-25468
chr76925313769253448E072-25098
chr76925357969253652E072-24894
chr76925581069255891E072-22655
chr76925597869256099E072-22447
chr76925615269256331E072-22215
chr76925644469256498E072-22048
chr76925680269256978E072-21568
chr76927751969278350E072-196
chr76927858969279189E07243
chr76927926469279392E072718
chr76928182969281985E0723283
chr76928207769282599E0723531
chr76928266169282801E0724115
chr76928292869283129E0724382
chr76928316069283354E0724614
chr76928336769283423E0724821
chr76928355769283680E0725011
chr76928393169284101E0725385
chr76928410969284350E0725563
chr76928438269284877E0725836
chr76928934569290895E07210799
chr76930460369304752E07226057
chr76930481169304970E07226265
chr76930499669305311E07226450
chr76930532969305492E07226783
chr76932789569327997E07249349
chr76923745669237540E073-41006
chr76924539569245776E073-32770
chr76924589769245947E073-32599
chr76924599569246049E073-32497
chr76924615569246205E073-32341
chr76924637769246831E073-31715
chr76924685469247039E073-31507
chr76924795869248925E073-29621
chr76924901069249050E073-29496
chr76924929169249464E073-29082
chr76925402369254231E073-24315
chr76925431169254389E073-24157
chr76925452269254674E073-23872
chr76925472469254803E073-23743
chr76925485469255024E073-23522
chr76927751969278350E073-196
chr76927858969279189E07343
chr76928207769282599E0733531
chr76928266169282801E0734115
chr76928292869283129E0734382
chr76928316069283354E0734614
chr76928336769283423E0734821
chr76928355769283680E0735011
chr76928393169284101E0735385
chr76928410969284350E0735563
chr76928754569287658E0738999
chr76928774269287936E0739196
chr76930481169304970E07326265
chr76930499669305311E07326450
chr76930532969305492E07326783
chr76930780169307851E07329255
chr76930787969307983E07329333
chr76923400969234261E074-44285
chr76923430669234584E074-43962
chr76923468969234739E074-43807
chr76923474769234807E074-43739
chr76923802469238417E074-40129
chr76923842969238547E074-39999
chr76923856669239126E074-39420
chr76924539569245776E074-32770
chr76924589769245947E074-32599
chr76924599569246049E074-32497
chr76924615569246205E074-32341
chr76924637769246831E074-31715
chr76924685469247039E074-31507
chr76924713869247188E074-31358
chr76924727769247327E074-31219
chr76924738769247437E074-31109
chr76924748969247568E074-30978
chr76924768869247928E074-30618
chr76924795869248925E074-29621
chr76924901069249050E074-29496
chr76924929169249464E074-29082
chr76925284769253078E074-25468
chr76925313769253448E074-25098
chr76925357969253652E074-24894
chr76925365369253703E074-24843
chr76925384369253959E074-24587
chr76925402369254231E074-24315
chr76925431169254389E074-24157
chr76925581069255891E074-22655
chr76925597869256099E074-22447
chr76925615269256331E074-22215
chr76925644469256498E074-22048
chr76925680269256978E074-21568
chr76927388069273930E074-4616
chr76927751969278350E074-196
chr76927858969279189E07443
chr76927926469279392E074718
chr76928013469280207E0741588
chr76928207769282599E0743531
chr76928266169282801E0744115
chr76928292869283129E0744382
chr76928316069283354E0744614
chr76928336769283423E0744821
chr76928393169284101E0745385
chr76928410969284350E0745563
chr76928438269284877E0745836
chr76928754569287658E0748999
chr76928774269287936E0749196
chr76928934569290895E07410799
chr76929628269296481E07417736
chr76930230069302763E07423754
chr76930282869302936E07424282
chr76930404769304108E07425501
chr76930413269304192E07425586
chr76930451369304573E07425967
chr76930460369304752E07426057
chr76930481169304970E07426265
chr76930499669305311E07426450
chr76930532969305492E07426783
chr76930602269306072E07427476
chr76930624769306370E07427701
chr76930638069306514E07427834
chr76932438569324463E07445839
chr76932454669324733E07446000
chr76924685469247039E081-31507
chr76924713869247188E081-31358
chr76924727769247327E081-31219
chr76924738769247437E081-31109
chr76924748969247568E081-30978
chr76924768869247928E081-30618
chr76924795869248925E081-29621
chr76924901069249050E081-29496
chr76924929169249464E081-29082
chr76925284769253078E081-25468
chr76925313769253448E081-25098
chr76925357969253652E081-24894
chr76925365369253703E081-24843
chr76925384369253959E081-24587
chr76925402369254231E081-24315
chr76925431169254389E081-24157
chr76925452269254674E081-23872
chr76925472469254803E081-23743
chr76925485469255024E081-23522
chr76925615269256331E081-22215
chr76925644469256498E081-22048
chr76925680269256978E081-21568
chr76925843169258491E081-20055
chr76925852769258593E081-19953
chr76926922869269454E081-9092
chr76926978469269981E081-8565
chr76927006769270240E081-8306
chr76927025269270375E081-8171
chr76927047969270677E081-7869
chr76927110769271147E081-7399
chr76927858969279189E08143
chr76927926469279392E081718
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