rs7796556

Homo sapiens
G>A
LOC105379749 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0257 (7546/29316,GnomAD)
T=0279 (1395/5008,1000G)
NT_187562.1:514632 (GRCh38.p7) (7q34)
AD
GWASdb2
1   publication(s)
See rs on genome
56 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7 alt locus HSCHR7_2_CTG6NT_187562.1:g.514632G>A
GRCh37.p13 chr 7NC_000007.13:g.142100911C>T
TRB genomic regionNG_001333.2:g.345747G>A
GRCh37.p13 chr 7 fix patch HG7_PATCHNW_003571040.1:g.694703G>A

Gene: LOC105379749, uncharacterized LOC105379749(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105379749 transcript variant X5XR_001756285.1:n.N/AIntron Variant
LOC105379749 transcript variant X4XR_001756286.1:n.N/AIntron Variant
LOC105379749 transcript variant X5XR_001756287.1:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.465A=0.535
1000GenomesAmericanSub694G=0.790A=0.210
1000GenomesEast AsianSub1008G=0.886A=0.114
1000GenomesEuropeSub1006G=0.846A=0.154
1000GenomesGlobalStudy-wide5008G=0.721A=0.279
1000GenomesSouth AsianSub978G=0.720A=0.280
The Genome Aggregation DatabaseAfricanSub8566G=0.514A=0.486
The Genome Aggregation DatabaseAmericanSub740G=0.850A=0.150
The Genome Aggregation DatabaseEast AsianSub1562G=0.904A=0.096
The Genome Aggregation DatabaseEuropeSub18146G=0.830A=0.170
The Genome Aggregation DatabaseGlobalStudy-wide29316G=0.742A=0.257
The Genome Aggregation DatabaseOtherSub302G=0.860A=0.140
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs77965565.5E-05alcoholism (heaviness of drinking)21529783

eQTL of rs7796556 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7796556 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7142127096142127146E06726185
chr7142128426142128476E06727515
chr7142133990142134231E06733079
chr7142134346142134436E06733435
chr7142134481142134532E06733570
chr7142134542142135457E06733631
chr7142103715142103813E0692804
chr7142103876142104033E0692965
chr7142104137142104242E0693226
chr7142107575142107693E0696664
chr7142115486142115943E06914575
chr7142115952142116026E06915041
chr7142126715142126775E06925804
chr7142127096142127146E06926185
chr7142128426142128476E06927515
chr7142133990142134231E06933079
chr7142134346142134436E06933435
chr7142134481142134532E06933570
chr7142115318142115446E07114407
chr7142115486142115943E07114575
chr7142115952142116026E07115041
chr7142127414142127465E07126503
chr7142128426142128476E07127515
chr7142133990142134231E07133079
chr7142134346142134436E07133435
chr7142134481142134532E07133570
chr7142134542142135457E07133631
chr7142103715142103813E0722804
chr7142103876142104033E0722965
chr7142104137142104242E0723226
chr7142107575142107693E0726664
chr7142126715142126775E07225804
chr7142127096142127146E07226185
chr7142127414142127465E07226503
chr7142128426142128476E07227515
chr7142129165142129242E07228254
chr7142129365142129405E07228454
chr7142129463142129525E07228552
chr7142134542142135457E07233631
chr7142115486142115943E07314575
chr7142115952142116026E07315041
chr7142103715142103813E0742804
chr7142103876142104033E0742965
chr7142104137142104242E0743226
chr7142107575142107693E0746664
chr7142115318142115446E07414407
chr7142115486142115943E07414575
chr7142126715142126775E07425804
chr7142127096142127146E07426185
chr7142127414142127465E07426503
chr7142128426142128476E07427515
chr7142112004142112064E08111093
chr7142112171142112256E08111260
chr7142112311142112419E08111400
chr7142112491142112774E08111580
chr7142114658142114732E08113747