rs7797617

Homo sapiens
A>C
ZNF786 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0011 (335/29982,GnomAD)
C=0017 (506/29118,TOPMED)
C=0013 (63/5008,1000G)
chr7:149088629 (GRCh38.p7) (7q36.1)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
29 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.149088629A>C
GRCh37.p13 chr 7NC_000007.13:g.148785721A>C

Gene: ZNF786, zinc finger protein 786(minus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF786 transcriptNM_152411.3:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.955C=0.045
1000GenomesAmericanSub694A=0.990C=0.010
1000GenomesEast AsianSub1008A=1.000C=0.000
1000GenomesEuropeSub1006A=1.000C=0.000
1000GenomesGlobalStudy-wide5008A=0.987C=0.013
1000GenomesSouth AsianSub978A=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8732A=0.962C=0.038
The Genome Aggregation DatabaseAmericanSub838A=1.000C=0.000
The Genome Aggregation DatabaseEast AsianSub1620A=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18490A=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29982A=0.988C=0.011
The Genome Aggregation DatabaseOtherSub302A=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.982C=0.017
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs77976170.000386alcohol dependence20201924

eQTL of rs7797617 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7797617 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7148752304148752601E068-33120
chr7148752304148752601E071-33120
chr7148825594148825654E07439873
chr7148799583148799660E08113862
chr7148799789148800080E08114068
chr7148800105148800173E08114384
chr7148800673148800808E08114952




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7148761954148763339E067-22382
chr7148787120148789037E0671399
chr7148822266148825533E06736545
chr7148761954148763339E068-22382
chr7148787120148789037E0681399
chr7148822266148825533E06836545
chr7148761954148763339E069-22382
chr7148787120148789037E0691399
chr7148822266148825533E06936545
chr7148761954148763339E070-22382
chr7148787120148789037E0701399
chr7148822266148825533E07036545
chr7148761954148763339E071-22382
chr7148787120148789037E0711399
chr7148822266148825533E07136545
chr7148761954148763339E072-22382
chr7148787120148789037E0721399
chr7148822266148825533E07236545
chr7148761954148763339E073-22382
chr7148787120148789037E0731399
chr7148822266148825533E07336545
chr7148761954148763339E074-22382
chr7148787120148789037E0741399
chr7148822266148825533E07436545
chr7148761954148763339E081-22382
chr7148822266148825533E08136545
chr7148761954148763339E082-22382
chr7148787120148789037E0821399
chr7148822266148825533E08236545