rs781028

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0159 (4761/29842,GnomAD)
C=0182 (5314/29118,TOPMED)
C=0203 (1017/5008,1000G)
C=0129 (499/3854,ALSPAC)
C=0117 (432/3708,TWINSUK)
chr7:86557217 (GRCh38.p7) (7q21.11)
AD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.86557217T>C
GRCh37.p13 chr 7NC_000007.13:g.86186533T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.739C=0.261
1000GenomesAmericanSub694T=0.890C=0.110
1000GenomesEast AsianSub1008T=0.735C=0.265
1000GenomesEuropeSub1006T=0.882C=0.118
1000GenomesGlobalStudy-wide5008T=0.797C=0.203
1000GenomesSouth AsianSub978T=0.780C=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.871C=0.129
The Genome Aggregation DatabaseAfricanSub8698T=0.758C=0.242
The Genome Aggregation DatabaseAmericanSub832T=0.880C=0.120
The Genome Aggregation DatabaseEast AsianSub1616T=0.752C=0.248
The Genome Aggregation DatabaseEuropeSub18394T=0.885C=0.114
The Genome Aggregation DatabaseGlobalStudy-wide29842T=0.840C=0.159
The Genome Aggregation DatabaseOtherSub302T=0.810C=0.190
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.817C=0.182
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.883C=0.117
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs7810280.000657alcohol dependence21314694

eQTL of rs781028 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs781028 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr78623020086230260E06743667
chr78623038286230468E06743849
chr78623020086230260E06843667
chr78623038286230468E06843849
chr78623020086230260E06943667
chr78623038286230468E06943849
chr78618807386188339E0701540
chr78622984086229894E07143307
chr78623020086230260E07143667
chr78623038286230468E07143849
chr78623020086230260E07243667
chr78623038286230468E07243849