rs7813894

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0355 (10613/29892,GnomAD)
T=0366 (10660/29118,TOPMED)
T=0339 (1699/5008,1000G)
T=0377 (1452/3854,ALSPAC)
T=0382 (1416/3708,TWINSUK)
chr8:5783921 (GRCh38.p7) (8p23.2)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.5783921C>T
GRCh37.p13 chr 8NC_000008.10:g.5641443C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.615T=0.385
1000GenomesAmericanSub694C=0.770T=0.230
1000GenomesEast AsianSub1008C=0.759T=0.241
1000GenomesEuropeSub1006C=0.650T=0.350
1000GenomesGlobalStudy-wide5008C=0.661T=0.339
1000GenomesSouth AsianSub978C=0.560T=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.623T=0.377
The Genome Aggregation DatabaseAfricanSub8694C=0.613T=0.387
The Genome Aggregation DatabaseAmericanSub834C=0.790T=0.210
The Genome Aggregation DatabaseEast AsianSub1614C=0.764T=0.236
The Genome Aggregation DatabaseEuropeSub18448C=0.643T=0.356
The Genome Aggregation DatabaseGlobalStudy-wide29892C=0.645T=0.355
The Genome Aggregation DatabaseOtherSub302C=0.600T=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.633T=0.366
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.618T=0.382
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs78138940.00019alcohol dependence(early age of onset)20201924
rs78138940.00085alcohol dependence20201924

eQTL of rs7813894 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7813894 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr856164965616701E081-24742
chr856168375616898E081-24545
chr856170585617108E081-24335
chr856519555652312E08210512