rs7829236

Homo sapiens
G>A
LOC105375746 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0058 (1744/29986,GnomAD)
A=0059 (1734/29118,TOPMED)
A=0069 (348/5008,1000G)
A=0061 (234/3854,ALSPAC)
A=0060 (223/3708,TWINSUK)
chr8:125558035 (GRCh38.p7) (8q24.13)
AD
GWASdb2
1   publication(s)
See rs on genome
78 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.125558035G>A
GRCh37.p13 chr 8NC_000008.10:g.126570279G>A

Gene: LOC105375746, uncharacterized LOC105375746(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105375746 transcript variant X1XR_001746072.1:n.N/AIntron Variant
LOC105375746 transcript variant X2XR_001746073.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.945A=0.055
1000GenomesAmericanSub694G=0.960A=0.040
1000GenomesEast AsianSub1008G=0.949A=0.051
1000GenomesEuropeSub1006G=0.920A=0.080
1000GenomesGlobalStudy-wide5008G=0.931A=0.069
1000GenomesSouth AsianSub978G=0.880A=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.939A=0.061
The Genome Aggregation DatabaseAfricanSub8726G=0.940A=0.060
The Genome Aggregation DatabaseAmericanSub838G=0.970A=0.030
The Genome Aggregation DatabaseEast AsianSub1620G=0.952A=0.048
The Genome Aggregation DatabaseEuropeSub18502G=0.940A=0.059
The Genome Aggregation DatabaseGlobalStudy-wide29986G=0.941A=0.058
The Genome Aggregation DatabaseOtherSub300G=0.930A=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.940A=0.059
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.940A=0.060
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs78292360.00075alcohol dependence20201924

eQTL of rs7829236 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7829236 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8126523654126523704E067-46575
chr8126523763126523813E067-46466
chr8126523867126523931E067-46348
chr8126526073126526159E067-44120
chr8126526264126526396E067-43883
chr8126526538126526578E067-43701
chr8126526608126527729E067-42550
chr8126568490126569555E067-724
chr8126581563126582627E06711284
chr8126582669126582842E06712390
chr8126523345126523582E068-46697
chr8126523654126523704E068-46575
chr8126523763126523813E068-46466
chr8126561152126561689E068-8590
chr8126561825126562238E068-8041
chr8126562454126562534E068-7745
chr8126568306126568463E068-1816
chr8126568490126569555E068-724
chr8126582669126582842E06812390
chr8126616531126616632E06846252
chr8126616743126617351E06846464
chr8126522253126522476E069-47803
chr8126522494126522558E069-47721
chr8126528806126528856E069-41423
chr8126561152126561689E069-8590
chr8126568306126568463E069-1816
chr8126568490126569555E069-724
chr8126581563126582627E06911284
chr8126524296126524434E071-45845
chr8126526073126526159E071-44120
chr8126558941126559006E071-11273
chr8126561152126561689E071-8590
chr8126561825126562238E071-8041
chr8126562454126562534E071-7745
chr8126568490126569555E071-724
chr8126569565126570447E0710
chr8126581563126582627E07111284
chr8126582669126582842E07112390
chr8126590819126592355E07120540
chr8126615485126615647E07145206
chr8126616531126616632E07146252
chr8126616743126617351E07146464
chr8126617360126617550E07147081
chr8126555790126556084E072-14195
chr8126561152126561689E072-8590
chr8126563455126563565E072-6714
chr8126563663126563800E072-6479
chr8126568490126569555E072-724
chr8126569565126570447E0720
chr8126581563126582627E07211284
chr8126582669126582842E07212390
chr8126522253126522476E073-47803
chr8126522494126522558E073-47721
chr8126523126126523192E073-47087
chr8126523345126523582E073-46697
chr8126568490126569555E073-724
chr8126569565126570447E0730
chr8126582669126582842E07312390
chr8126616531126616632E07346252
chr8126616743126617351E07346464
chr8126522494126522558E074-47721
chr8126524296126524434E074-45845
chr8126524681126526035E074-44244
chr8126561152126561689E074-8590
chr8126563455126563565E074-6714
chr8126563663126563800E074-6479
chr8126568306126568463E074-1816
chr8126568490126569555E074-724
chr8126592436126592538E07422157
chr8126592642126592747E07422363
chr8126616531126616632E07446252
chr8126580239126580393E0819960
chr8126580404126580720E08110125
chr8126580724126580895E08110445
chr8126580927126581107E08110648
chr8126589636126589686E08119357
chr8126589694126589748E08119415
chr8126589798126589849E08119519