| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 8 | NC_000008.11:g.133722977A>G |
| GRCh37.p13 chr 8 | NC_000008.10:g.134735220A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.799 | G=0.201 |
| 1000Genomes | American | Sub | 694 | A=0.990 | G=0.010 |
| 1000Genomes | East Asian | Sub | 1008 | A=1.000 | G=0.000 |
| 1000Genomes | Europe | Sub | 1006 | A=1.000 | G=0.000 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.945 | G=0.055 |
| 1000Genomes | South Asian | Sub | 978 | A=1.000 | G=0.000 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=1.000 | G=0.000 |
| The Genome Aggregation Database | African | Sub | 8716 | A=0.831 | G=0.169 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.990 | G=0.010 |
| The Genome Aggregation Database | East Asian | Sub | 1622 | A=1.000 | G=0.000 |
| The Genome Aggregation Database | Europe | Sub | 18494 | A=0.999 | G=0.000 |
| The Genome Aggregation Database | Global | Study-wide | 29972 | A=0.950 | G=0.049 |
| The Genome Aggregation Database | Other | Sub | 302 | A=1.000 | G=0.000 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.921 | G=0.078 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=1.000 | G=0.000 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 29082582 | Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations. | Almli LM | Addict Biol |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs7843718 | 5E-06 | alcohol dependence | 29082582 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr8 | 134758789 | 134759145 | E069 | 23569 |
| chr8 | 134779247 | 134780069 | E069 | 44027 |
| chr8 | 134686427 | 134687568 | E070 | -47652 |
| chr8 | 134758367 | 134758583 | E071 | 23147 |
| chr8 | 134758789 | 134759145 | E071 | 23569 |
| chr8 | 134758063 | 134758126 | E081 | 22843 |
| chr8 | 134758202 | 134758321 | E081 | 22982 |
| chr8 | 134758367 | 134758583 | E081 | 23147 |
| chr8 | 134758789 | 134759145 | E081 | 23569 |