Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 9 | NC_000009.12:g.74500195G>A |
GRCh37.p13 chr 9 | NC_000009.11:g.77115111G>A |
RORB RefSeqGene | NG_046926.1:g.7860G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
RORB transcript | NM_006914.3:c. | N/A | Intron Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
RORB-AS1 transcript | NR_125791.1:n. | N/A | Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.764 | A=0.236 |
1000Genomes | American | Sub | 694 | G=0.560 | A=0.440 |
1000Genomes | East Asian | Sub | 1008 | G=0.938 | A=0.062 |
1000Genomes | Europe | Sub | 1006 | G=0.695 | A=0.305 |
1000Genomes | Global | Study-wide | 5008 | G=0.767 | A=0.233 |
1000Genomes | South Asian | Sub | 978 | G=0.820 | A=0.180 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.660 | A=0.340 |
The Genome Aggregation Database | African | Sub | 8712 | G=0.760 | A=0.240 |
The Genome Aggregation Database | American | Sub | 836 | G=0.550 | A=0.450 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.917 | A=0.083 |
The Genome Aggregation Database | Europe | Sub | 18470 | G=0.677 | A=0.322 |
The Genome Aggregation Database | Global | Study-wide | 29942 | G=0.711 | A=0.288 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.740 | A=0.260 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.708 | A=0.291 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.670 | A=0.330 |
PMID | Title | Author | Journal |
---|---|---|---|
18227835 | Alpha-5/alpha-3 nicotinic receptor subunit alleles increase risk for heavy smoking. | Berrettini W | Mol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7846903 | 0.000122 | nicotine dependence | 18227835 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr9 | 77130801 | 77130881 | E067 | 15690 |
chr9 | 77130980 | 77131030 | E067 | 15869 |
chr9 | 77140658 | 77140724 | E067 | 25547 |
chr9 | 77157830 | 77157880 | E067 | 42719 |
chr9 | 77157987 | 77158133 | E067 | 42876 |
chr9 | 77158196 | 77158339 | E067 | 43085 |
chr9 | 77158754 | 77158804 | E067 | 43643 |
chr9 | 77158892 | 77158972 | E067 | 43781 |
chr9 | 77159152 | 77159378 | E067 | 44041 |
chr9 | 77136097 | 77136238 | E068 | 20986 |
chr9 | 77157830 | 77157880 | E068 | 42719 |
chr9 | 77157987 | 77158133 | E068 | 42876 |
chr9 | 77158196 | 77158339 | E068 | 43085 |
chr9 | 77158754 | 77158804 | E068 | 43643 |
chr9 | 77158892 | 77158972 | E068 | 43781 |
chr9 | 77159152 | 77159378 | E068 | 44041 |
chr9 | 77157830 | 77157880 | E069 | 42719 |
chr9 | 77157987 | 77158133 | E069 | 42876 |
chr9 | 77158196 | 77158339 | E069 | 43085 |
chr9 | 77158754 | 77158804 | E069 | 43643 |
chr9 | 77158892 | 77158972 | E069 | 43781 |
chr9 | 77159152 | 77159378 | E069 | 44041 |
chr9 | 77118126 | 77118237 | E070 | 3015 |
chr9 | 77118408 | 77118467 | E070 | 3297 |
chr9 | 77118520 | 77118570 | E070 | 3409 |
chr9 | 77149601 | 77149651 | E070 | 34490 |
chr9 | 77149798 | 77150040 | E070 | 34687 |
chr9 | 77157830 | 77157880 | E071 | 42719 |
chr9 | 77157987 | 77158133 | E071 | 42876 |
chr9 | 77158196 | 77158339 | E071 | 43085 |
chr9 | 77158754 | 77158804 | E071 | 43643 |
chr9 | 77158892 | 77158972 | E071 | 43781 |
chr9 | 77159152 | 77159378 | E071 | 44041 |
chr9 | 77121460 | 77121576 | E072 | 6349 |
chr9 | 77121579 | 77121629 | E072 | 6468 |
chr9 | 77122041 | 77122091 | E072 | 6930 |
chr9 | 77149601 | 77149651 | E072 | 34490 |
chr9 | 77149798 | 77150040 | E072 | 34687 |
chr9 | 77157830 | 77157880 | E072 | 42719 |
chr9 | 77157987 | 77158133 | E072 | 42876 |
chr9 | 77158196 | 77158339 | E072 | 43085 |
chr9 | 77158754 | 77158804 | E072 | 43643 |
chr9 | 77158892 | 77158972 | E072 | 43781 |
chr9 | 77159152 | 77159378 | E072 | 44041 |
chr9 | 77157987 | 77158133 | E073 | 42876 |
chr9 | 77158196 | 77158339 | E073 | 43085 |
chr9 | 77158754 | 77158804 | E073 | 43643 |
chr9 | 77158892 | 77158972 | E073 | 43781 |
chr9 | 77159152 | 77159378 | E073 | 44041 |
chr9 | 77141451 | 77141623 | E074 | 26340 |
chr9 | 77141689 | 77141750 | E074 | 26578 |
chr9 | 77157987 | 77158133 | E074 | 42876 |
chr9 | 77158196 | 77158339 | E074 | 43085 |
chr9 | 77158754 | 77158804 | E074 | 43643 |
chr9 | 77158892 | 77158972 | E074 | 43781 |
chr9 | 77159152 | 77159378 | E074 | 44041 |
chr9 | 77149601 | 77149651 | E081 | 34490 |
chr9 | 77149798 | 77150040 | E081 | 34687 |
chr9 | 77150259 | 77150309 | E081 | 35148 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr9 | 77111439 | 77111623 | E067 | -3488 |
chr9 | 77111634 | 77115990 | E067 | 0 |
chr9 | 77116008 | 77116173 | E067 | 897 |
chr9 | 77116240 | 77116294 | E067 | 1129 |
chr9 | 77140778 | 77140862 | E067 | 25667 |
chr9 | 77140999 | 77141069 | E067 | 25888 |
chr9 | 77141171 | 77141361 | E067 | 26060 |
chr9 | 77110961 | 77111020 | E068 | -4091 |
chr9 | 77111145 | 77111195 | E068 | -3916 |
chr9 | 77111308 | 77111393 | E068 | -3718 |
chr9 | 77111439 | 77111623 | E068 | -3488 |
chr9 | 77111634 | 77115990 | E068 | 0 |
chr9 | 77116008 | 77116173 | E068 | 897 |
chr9 | 77140778 | 77140862 | E068 | 25667 |
chr9 | 77140999 | 77141069 | E068 | 25888 |
chr9 | 77141171 | 77141361 | E068 | 26060 |
chr9 | 77110961 | 77111020 | E069 | -4091 |
chr9 | 77111145 | 77111195 | E069 | -3916 |
chr9 | 77111308 | 77111393 | E069 | -3718 |
chr9 | 77111439 | 77111623 | E069 | -3488 |
chr9 | 77111634 | 77115990 | E069 | 0 |
chr9 | 77116008 | 77116173 | E069 | 897 |
chr9 | 77140778 | 77140862 | E069 | 25667 |
chr9 | 77140999 | 77141069 | E069 | 25888 |
chr9 | 77141171 | 77141361 | E069 | 26060 |
chr9 | 77111439 | 77111623 | E070 | -3488 |
chr9 | 77116240 | 77116294 | E070 | 1129 |
chr9 | 77110961 | 77111020 | E071 | -4091 |
chr9 | 77111145 | 77111195 | E071 | -3916 |
chr9 | 77111308 | 77111393 | E071 | -3718 |
chr9 | 77111439 | 77111623 | E071 | -3488 |
chr9 | 77111634 | 77115990 | E071 | 0 |
chr9 | 77140778 | 77140862 | E071 | 25667 |
chr9 | 77140999 | 77141069 | E071 | 25888 |
chr9 | 77141171 | 77141361 | E071 | 26060 |
chr9 | 77110961 | 77111020 | E072 | -4091 |
chr9 | 77111145 | 77111195 | E072 | -3916 |
chr9 | 77111308 | 77111393 | E072 | -3718 |
chr9 | 77111439 | 77111623 | E072 | -3488 |
chr9 | 77111634 | 77115990 | E072 | 0 |
chr9 | 77116008 | 77116173 | E072 | 897 |
chr9 | 77116240 | 77116294 | E072 | 1129 |
chr9 | 77140778 | 77140862 | E072 | 25667 |
chr9 | 77140999 | 77141069 | E072 | 25888 |
chr9 | 77141171 | 77141361 | E072 | 26060 |
chr9 | 77110961 | 77111020 | E073 | -4091 |
chr9 | 77111145 | 77111195 | E073 | -3916 |
chr9 | 77111308 | 77111393 | E073 | -3718 |
chr9 | 77111439 | 77111623 | E073 | -3488 |
chr9 | 77111634 | 77115990 | E073 | 0 |
chr9 | 77116008 | 77116173 | E073 | 897 |
chr9 | 77116240 | 77116294 | E073 | 1129 |
chr9 | 77140778 | 77140862 | E073 | 25667 |
chr9 | 77140999 | 77141069 | E073 | 25888 |
chr9 | 77141171 | 77141361 | E073 | 26060 |
chr9 | 77111439 | 77111623 | E074 | -3488 |
chr9 | 77111634 | 77115990 | E074 | 0 |
chr9 | 77140778 | 77140862 | E074 | 25667 |
chr9 | 77140999 | 77141069 | E074 | 25888 |
chr9 | 77141171 | 77141361 | E074 | 26060 |
chr9 | 77111634 | 77115990 | E081 | 0 |
chr9 | 77111439 | 77111623 | E082 | -3488 |
chr9 | 77111634 | 77115990 | E082 | 0 |
chr9 | 77116240 | 77116294 | E082 | 1129 |