SNP Detail Info-rs7867510

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0166 (4981/29948,GnomAD)
A=0154 (4510/29118,TOPMED)
A=0199 (995/5008,1000G)
A=0182 (703/3854,ALSPAC)
A=0177 (656/3708,TWINSUK)

Position: chr9:15353412 (GRCh38.p7) (9p22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 15 Enhancers around

Promoter: 10 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.15353412G>A
GRCh37.p13 chr 9	NC_000009.11:g.15353410G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.876	A=0.124
1000Genomes	American	Sub	694	G=0.830	A=0.170
1000Genomes	East Asian	Sub	1008	G=0.724	A=0.276
1000Genomes	Europe	Sub	1006	G=0.796	A=0.204
1000Genomes	Global	Study-wide	5008	G=0.801	A=0.199
1000Genomes	South Asian	Sub	978	G=0.770	A=0.230
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.818	A=0.182
The Genome Aggregation Database	African	Sub	8718	G=0.886	A=0.114
The Genome Aggregation Database	American	Sub	836	G=0.810	A=0.190
The Genome Aggregation Database	East Asian	Sub	1618	G=0.714	A=0.286
The Genome Aggregation Database	Europe	Sub	18474	G=0.821	A=0.178
The Genome Aggregation Database	Global	Study-wide	29948	G=0.833	A=0.166
The Genome Aggregation Database	Other	Sub	302	G=0.790	A=0.210
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.845	A=0.154
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.823	A=0.177

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7867510	0.000366	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	15351090	15351434	E069	-1976
chr9	15351444	15351554	E069	-1856
chr9	15351090	15351434	E071	-1976
chr9	15351444	15351554	E071	-1856
chr9	15351090	15351434	E072	-1976
chr9	15370867	15371337	E072	17457
chr9	15351090	15351434	E073	-1976
chr9	15351444	15351554	E073	-1856
chr9	15370604	15370697	E081	17194
chr9	15370707	15370851	E081	17297
chr9	15370867	15371337	E081	17457
chr9	15369274	15369476	E082	15864
chr9	15370604	15370697	E082	17194
chr9	15370707	15370851	E082	17297
chr9	15370867	15371337	E082	17457

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr9	15305588	15308020	E067	-45390
chr9	15305588	15308020	E068	-45390
chr9	15305588	15308020	E069	-45390
chr9	15305588	15308020	E070	-45390
chr9	15305588	15308020	E071	-45390
chr9	15305588	15308020	E072	-45390
chr9	15305588	15308020	E073	-45390
chr9	15305588	15308020	E074	-45390
chr9	15305588	15308020	E081	-45390
chr9	15305588	15308020	E082	-45390

rs7867510