SNP Detail Info-rs787151

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0228 (6839/29954,GnomAD)
A==0224 (6550/29118,TOPMED)
A==0158 (793/5008,1000G)
A==0230 (887/3854,ALSPAC)
A==0221 (819/3708,TWINSUK)

Position: chr2:143898268 (GRCh38.p7) (2q22.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 33 Enhancers around

Promoter: 9 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.143898268A>G
GRCh37.p13 chr 2	NC_000002.11:g.144655836A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.242	G=0.758
1000Genomes	American	Sub	694	A=0.140	G=0.860
1000Genomes	East Asian	Sub	1008	A=0.036	G=0.964
1000Genomes	Europe	Sub	1006	A=0.257	G=0.743
1000Genomes	Global	Study-wide	5008	A=0.158	G=0.842
1000Genomes	South Asian	Sub	978	A=0.080	G=0.920
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.230	G=0.770
The Genome Aggregation Database	African	Sub	8714	A=0.230	G=0.770
The Genome Aggregation Database	American	Sub	838	A=0.170	G=0.830
The Genome Aggregation Database	East Asian	Sub	1622	A=0.037	G=0.963
The Genome Aggregation Database	Europe	Sub	18478	A=0.245	G=0.754
The Genome Aggregation Database	Global	Study-wide	29954	A=0.228	G=0.771
The Genome Aggregation Database	Other	Sub	302	A=0.330	G=0.670
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.224	G=0.775
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.221	G=0.779

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs787151	2.75E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	144695982	144696253	E067	40146
chr2	144696388	144696506	E067	40552
chr2	144696903	144698125	E068	41067
chr2	144695982	144696253	E069	40146
chr2	144649329	144650013	E070	-5823
chr2	144695982	144696253	E070	40146
chr2	144696388	144696506	E070	40552
chr2	144696537	144696637	E070	40701
chr2	144696639	144696731	E070	40803
chr2	144696783	144696845	E070	40947
chr2	144696903	144698125	E070	41067
chr2	144661137	144661339	E072	5301
chr2	144698164	144698234	E074	42328
chr2	144632817	144632935	E081	-22901
chr2	144633055	144633105	E081	-22731
chr2	144633168	144633470	E081	-22366
chr2	144634716	144634950	E081	-20886
chr2	144635280	144635413	E081	-20423
chr2	144695982	144696253	E081	40146
chr2	144696388	144696506	E081	40552
chr2	144696537	144696637	E081	40701
chr2	144696639	144696731	E081	40803
chr2	144696783	144696845	E081	40947
chr2	144696903	144698125	E081	41067
chr2	144698164	144698234	E081	42328
chr2	144698319	144698369	E081	42483
chr2	144702626	144702703	E081	46790
chr2	144703445	144703495	E081	47609
chr2	144646757	144647213	E082	-8623
chr2	144696903	144698125	E082	41067
chr2	144698164	144698234	E082	42328
chr2	144698319	144698369	E082	42483
chr2	144703445	144703495	E082	47609

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr2	144692745	144695958	E067	36909
chr2	144692745	144695958	E068	36909
chr2	144692745	144695958	E069	36909
chr2	144692745	144695958	E070	36909
chr2	144692745	144695958	E071	36909
chr2	144692745	144695958	E072	36909
chr2	144692745	144695958	E073	36909
chr2	144692745	144695958	E074	36909
chr2	144692745	144695958	E082	36909

rs787151