rs7873864

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0228 (6851/29924,GnomAD)
A=0276 (8055/29118,TOPMED)
A=0207 (1039/5008,1000G)
A=0170 (654/3854,ALSPAC)
A=0175 (649/3708,TWINSUK)
chr9:36740960 (GRCh38.p7) (9p13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
13 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.36740960G>A
GRCh37.p13 chr 9NC_000009.11:g.36740957G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.651A=0.349
1000GenomesAmericanSub694G=0.790A=0.210
1000GenomesEast AsianSub1008G=0.931A=0.069
1000GenomesEuropeSub1006G=0.834A=0.166
1000GenomesGlobalStudy-wide5008G=0.793A=0.207
1000GenomesSouth AsianSub978G=0.800A=0.200
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.830A=0.170
The Genome Aggregation DatabaseAfricanSub8704G=0.646A=0.354
The Genome Aggregation DatabaseAmericanSub836G=0.770A=0.230
The Genome Aggregation DatabaseEast AsianSub1620G=0.933A=0.067
The Genome Aggregation DatabaseEuropeSub18462G=0.815A=0.184
The Genome Aggregation DatabaseGlobalStudy-wide29924G=0.771A=0.228
The Genome Aggregation DatabaseOtherSub302G=0.760A=0.240
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.723A=0.276
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.825A=0.175
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs78738640.00026alcohol dependence(early age of onset)20201924
rs78738640.0003alcohol dependence20201924

eQTL of rs7873864 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7873864 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr93673849736738607E067-2350
chr93673866836739240E067-1717
chr93673834536738456E069-2501
chr93673849736738607E069-2350
chr93673866836739240E069-1717
chr93673834536738456E071-2501
chr93673849736738607E071-2350
chr93676492236765357E07123965
chr93677971336779806E07238756
chr93678183536781915E07240878
chr93676492236765357E08123965
chr93675452436754592E08213567






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr93676552736766443E06724570
chr93676552736766443E06824570
chr93677007636770332E06829119
chr93676552736766443E06924570
chr93676552736766443E07024570
chr93673964436740080E071-877
chr93676552736766443E07124570
chr93676552736766443E07224570
chr93676552736766443E07324570
chr93676552736766443E07424570
chr93673927036739468E082-1489
chr93673964436740080E082-877
chr93676552736766443E08224570