SNP Detail Info-rs7894102

Sequence Name	Change(s)
GRCh38.p7 chr 10	NC_000010.11:g.43559519G>A
GRCh37.p13 chr 10	NC_000010.10:g.44054967G>A

Molecule type	Change	Amino acid[Codon]	SO Term
ZNF239 transcript variant 2	NM_001099282.1:c.	N/A	Intron Variant
ZNF239 transcript variant 4	NM_001099283.1:c.	N/A	Intron Variant
ZNF239 transcript variant 3	NM_001099284.1:c.	N/A	Intron Variant
ZNF239 transcript variant 5	NM_001324347.1:c.	N/A	Intron Variant
ZNF239 transcript variant 6	NM_001324348.1:c.	N/A	Intron Variant
ZNF239 transcript variant 7	NM_001324349.1:c.	N/A	Intron Variant
ZNF239 transcript variant 8	NM_001324350.1:c.	N/A	Intron Variant
ZNF239 transcript variant 9	NM_001324351.1:c.	N/A	Intron Variant
ZNF239 transcript variant 10	NM_001324352.1:c.	N/A	Intron Variant
ZNF239 transcript variant 11	NM_001324353.1:c.	N/A	Intron Variant
ZNF239 transcript variant 1	NM_005674.2:c.	N/A	Intron Variant
ZNF239 transcript variant X8	XM_005271832.2:c.	N/A	Intron Variant
ZNF239 transcript variant X7	XM_006718001.2:c.	N/A	Intron Variant
ZNF239 transcript variant X9	XM_006718003.3:c.	N/A	Intron Variant
ZNF239 transcript variant X1	XM_011540232.2:c.	N/A	Intron Variant
ZNF239 transcript variant X2	XM_011540234.2:c.	N/A	Intron Variant
ZNF239 transcript variant X3	XM_011540235.2:c.	N/A	Intron Variant
ZNF239 transcript variant X5	XM_011540236.2:c.	N/A	Intron Variant
ZNF239 transcript variant X6	XM_011540237.2:c.	N/A	Intron Variant
ZNF239 transcript variant X10	XM_011540238.2:c.	N/A	Intron Variant
ZNF239 transcript variant X4	XM_017016740.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.812	A=0.188
1000Genomes	American	Sub	694	G=0.790	A=0.210
1000Genomes	East Asian	Sub	1008	G=0.555	A=0.445
1000Genomes	Europe	Sub	1006	G=0.845	A=0.155
1000Genomes	Global	Study-wide	5008	G=0.765	A=0.235
1000Genomes	South Asian	Sub	978	G=0.820	A=0.180
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.871	A=0.129
The Genome Aggregation Database	African	Sub	8696	G=0.801	A=0.199
The Genome Aggregation Database	American	Sub	838	G=0.770	A=0.230
The Genome Aggregation Database	East Asian	Sub	1604	G=0.550	A=0.450
The Genome Aggregation Database	Europe	Sub	18488	G=0.867	A=0.132
The Genome Aggregation Database	Global	Study-wide	29926	G=0.827	A=0.172
The Genome Aggregation Database	Other	Sub	300	G=0.850	A=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.822	A=0.177
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.874	A=0.126

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs7894102	7.64E-06	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr10:44054967	ZNF239	ENSG00000196793.9	G>A	1.5066e-7	-15099	Cerebellum
Chr10:44054967	ZNF239	ENSG00000196793.9	G>A	1.1330e-3	-15099	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr10	44068463	44068676	E067	13496
chr10	44068686	44068740	E067	13719
chr10	44068354	44068429	E068	13387
chr10	44068463	44068676	E068	13496
chr10	44068686	44068740	E068	13719
chr10	44102909	44102959	E068	47942
chr10	44102981	44103031	E068	48014
chr10	44068463	44068676	E069	13496
chr10	44068686	44068740	E069	13719
chr10	44102909	44102959	E069	47942
chr10	44102981	44103031	E069	48014
chr10	44068463	44068676	E071	13496
chr10	44068686	44068740	E071	13719
chr10	44091003	44091153	E071	36036
chr10	44102909	44102959	E081	47942
chr10	44102981	44103031	E081	48014
chr10	44068354	44068429	E082	13387
chr10	44102909	44102959	E082	47942
chr10	44102981	44103031	E082	48014

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr10	44068743	44070477	E067	13776
chr10	44101444	44102892	E067	46477
chr10	44068743	44070477	E068	13776
chr10	44101444	44102892	E068	46477
chr10	44068743	44070477	E069	13776
chr10	44101444	44102892	E069	46477
chr10	44068743	44070477	E070	13776
chr10	44101444	44102892	E070	46477
chr10	44068743	44070477	E071	13776
chr10	44101444	44102892	E071	46477
chr10	44068743	44070477	E072	13776
chr10	44101444	44102892	E072	46477
chr10	44068743	44070477	E073	13776
chr10	44101444	44102892	E073	46477
chr10	44053211	44053261	E074	-1706
chr10	44068743	44070477	E074	13776
chr10	44101444	44102892	E074	46477
chr10	44068743	44070477	E081	13776
chr10	44101444	44102892	E081	46477
chr10	44068743	44070477	E082	13776
chr10	44101444	44102892	E082	46477

rs7894102