rs7904493

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
C==0326 (9736/29864,GnomAD)
C==0302 (8804/29118,TOPMED)
C==0202 (1014/5008,1000G)
C==0413 (1592/3854,ALSPAC)
C==0427 (1582/3708,TWINSUK)
chr10:53605659 (GRCh38.p7) (10q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.53605659C>A
GRCh37.p13 chr 10NC_000010.10:g.55365419C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.165A=0.835
1000GenomesAmericanSub694C=0.330A=0.670
1000GenomesEast AsianSub1008C=0.018A=0.982
1000GenomesEuropeSub1006C=0.395A=0.605
1000GenomesGlobalStudy-wide5008C=0.202A=0.798
1000GenomesSouth AsianSub978C=0.150A=0.850
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.413A=0.587
The Genome Aggregation DatabaseAfricanSub8688C=0.209A=0.791
The Genome Aggregation DatabaseAmericanSub834C=0.300A=0.700
The Genome Aggregation DatabaseEast AsianSub1612C=0.006A=0.994
The Genome Aggregation DatabaseEuropeSub18428C=0.409A=0.590
The Genome Aggregation DatabaseGlobalStudy-wide29864C=0.326A=0.674
The Genome Aggregation DatabaseOtherSub302C=0.380A=0.620
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.302A=0.697
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.427A=0.573
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs79044930.000389alcohol dependence20201924

eQTL of rs7904493 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7904493 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.