rs7905194

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0245 (7353/29900,GnomAD)
C==0292 (8520/29118,TOPMED)
C==0271 (1357/5008,1000G)
C==0215 (827/3854,ALSPAC)
C==0220 (817/3708,TWINSUK)
chr10:118938179 (GRCh38.p7) (10q26.11)
AD
GWASdb2
1   publication(s)
See rs on genome
71 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.118938179C>T
GRCh37.p13 chr 10NC_000010.10:g.120697691C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.411T=0.589
1000GenomesAmericanSub694C=0.240T=0.760
1000GenomesEast AsianSub1008C=0.179T=0.821
1000GenomesEuropeSub1006C=0.200T=0.800
1000GenomesGlobalStudy-wide5008C=0.271T=0.729
1000GenomesSouth AsianSub978C=0.270T=0.730
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.215T=0.785
The Genome Aggregation DatabaseAfricanSub8670C=0.374T=0.626
The Genome Aggregation DatabaseAmericanSub838C=0.210T=0.790
The Genome Aggregation DatabaseEast AsianSub1620C=0.191T=0.809
The Genome Aggregation DatabaseEuropeSub18472C=0.192T=0.807
The Genome Aggregation DatabaseGlobalStudy-wide29900C=0.245T=0.754
The Genome Aggregation DatabaseOtherSub300C=0.230T=0.770
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.292T=0.707
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.220T=0.780
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs79051946.05E-05alcohol dependence21314694

eQTL of rs7905194 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7905194 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10120718372120719016E06720681
chr10120719026120719196E06721335
chr10120710421120710491E06812730
chr10120710626120710686E06812935
chr10120710814120711031E06813123
chr10120718372120719016E06820681
chr10120719026120719196E06821335
chr10120719255120719348E06821564
chr10120719026120719196E06921335
chr10120719255120719348E06921564
chr10120660319120660509E070-37182
chr10120660575120660628E070-37063
chr10120660823120661152E070-36539
chr10120662559120662790E070-34901
chr10120662865120662947E070-34744
chr10120663588120663652E070-34039
chr10120663673120663723E070-33968
chr10120677753120677939E070-19752
chr10120678081120678313E070-19378
chr10120708093120708143E07010402
chr10120708194120708411E07010503
chr10120708520120708633E07010829
chr10120708756120708865E07011065
chr10120709302120709352E07011611
chr10120709453120709542E07011762
chr10120709717120710197E07012026
chr10120710421120710491E07012730
chr10120710626120710686E07012935
chr10120710814120711031E07013123
chr10120712559120712630E07014868
chr10120712854120713173E07015163
chr10120742854120743099E07045163
chr10120743159120743227E07045468
chr10120708194120708411E07110503
chr10120712854120713173E07115163
chr10120713452120713825E07115761
chr10120718222120718280E07120531
chr10120718372120719016E07120681
chr10120719026120719196E07121335
chr10120719255120719348E07121564
chr10120713452120713825E07215761
chr10120718372120719016E07220681
chr10120719026120719196E07221335
chr10120668014120668074E073-29617
chr10120718372120719016E07320681
chr10120719026120719196E07321335
chr10120713452120713825E07415761
chr10120717996120718117E07420305
chr10120718222120718280E07420531
chr10120718372120719016E07420681
chr10120719026120719196E07421335
chr10120719255120719348E07421564
chr10120709717120710197E08112026
chr10120710421120710491E08112730
chr10120710626120710686E08112935
chr10120710814120711031E08113123
chr10120674156120674440E082-23251
chr10120674446120674681E082-23010
chr10120674685120674764E082-22927
chr10120677591120677696E082-19995
chr10120677753120677939E082-19752
chr10120678081120678313E082-19378
chr10120708194120708411E08210503
chr10120708520120708633E08210829
chr10120708756120708865E08211065
chr10120709302120709352E08211611
chr10120709453120709542E08211762
chr10120709717120710197E08212026
chr10120710421120710491E08212730
chr10120710626120710686E08212935
chr10120710814120711031E08213123