SNP Detail Info-rs790919

Organism: Homo sapiens

Alleles: A>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0419 (12545/29912,GnomAD)
A==0402 (11707/29118,TOPMED)
A==0366 (1834/5008,1000G)
A==0453 (1746/3854,ALSPAC)
A==0463 (1715/3708,TWINSUK)

Position: chr6:153977740 (GRCh38.p7) (6q25.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.153977740A>T
GRCh37.p13 chr 6	NC_000006.11:g.154298875A>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.317	T=0.683
1000Genomes	American	Sub	694	A=0.450	T=0.550
1000Genomes	East Asian	Sub	1008	A=0.365	T=0.635
1000Genomes	Europe	Sub	1006	A=0.454	T=0.546
1000Genomes	Global	Study-wide	5008	A=0.366	T=0.634
1000Genomes	South Asian	Sub	978	A=0.290	T=0.710
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.453	T=0.547
The Genome Aggregation Database	African	Sub	8708	A=0.345	T=0.655
The Genome Aggregation Database	American	Sub	836	A=0.450	T=0.550
The Genome Aggregation Database	East Asian	Sub	1612	A=0.411	T=0.589
The Genome Aggregation Database	Europe	Sub	18454	A=0.454	T=0.545
The Genome Aggregation Database	Global	Study-wide	29912	A=0.419	T=0.580
The Genome Aggregation Database	Other	Sub	302	A=0.410	T=0.590
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.402	T=0.597
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.463	T=0.537

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs790919	0.000679	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs790919