rs7913179

Homo sapiens
C>A / C>G
None
Check p-value
SNV (Single Nucleotide Variation)
A=0112 (3338/29778,GnomAD)
A=0135 (3941/29118,TOPMED)
A=0156 (780/5008,1000G)
A=0042 (163/3854,ALSPAC)
A=0032 (117/3708,TWINSUK)
chr10:97705109 (GRCh38.p7) (10q24.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
39 Enhancers around
38 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.97705109C>A
GRCh38.p7 chr 10NC_000010.11:g.97705109C>G
GRCh37.p13 chr 10NC_000010.10:g.99464866C>A
GRCh37.p13 chr 10NC_000010.10:g.99464866C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.732A=0.268
1000GenomesAmericanSub694C=0.820A=0.180
1000GenomesEast AsianSub1008C=0.755A=0.245
1000GenomesEuropeSub1006C=0.974A=0.026
1000GenomesGlobalStudy-wide5008C=0.844A=0.156
1000GenomesSouth AsianSub978C=0.970A=0.030
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.958A=0.042
The Genome Aggregation DatabaseAfricanSub8642C=0.760A=0.240
The Genome Aggregation DatabaseAmericanSub834C=0.790A=0.210
The Genome Aggregation DatabaseEast AsianSub1610C=0.747A=0.253
The Genome Aggregation DatabaseEuropeSub18390C=0.963A=0.036
The Genome Aggregation DatabaseGlobalStudy-wide29778C=0.887A=0.112
The Genome Aggregation DatabaseOtherSub302C=0.950A=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.864A=0.135
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.968A=0.032
PMID Title Author Journal
28990359Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.Polimanti RAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs79131791E-08alcohol dependence28990359

eQTL of rs7913179 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7913179 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr101870757018707806E067-19642
chr101870792418708107E067-19341
chr101870813118708217E067-19231
chr101870831818708395E067-19053
chr101872730718727693E0670
chr101876203718762148E06734589
chr101876233818762696E06734890
chr101876278518763243E06735337
chr101876326118763489E06735813
chr101868337618683426E068-44022
chr101868351318683567E068-43881
chr101868384318683900E068-43548
chr101871200218712216E068-15232
chr101871226518712417E068-15031
chr101871265218712702E068-14746
chr101871314618713468E068-13980
chr101873892618739072E06811478
chr101876203718762148E06834589
chr101876233818762696E06834890
chr101876278518763243E06835337
chr101876326118763489E06835813
chr101876278518763243E06935337
chr101876326118763489E06935813
chr101876203718762148E07034589
chr101876233818762696E07034890
chr101876278518763243E07035337
chr101876326118763489E07035813
chr101876380518763944E07036357
chr101875641018756508E07128962
chr101876082118760913E07133373
chr101870298818703372E072-24076
chr101876082118760913E07233373
chr101876203718762148E07234589
chr101876233818762696E07234890
chr101876278518763243E07235337
chr101876326118763489E07235813
chr101870298818703372E073-24076
chr101872719118727241E081-207
chr101872730718727693E0810








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr101868896418689153E067-38295
chr101868920318690150E067-37298
chr101869019418690259E067-37189
chr101869028818690596E067-36852
chr101869088118691009E067-36439
chr101869241418692464E067-34984
chr101868920318690150E068-37298
chr101869019418690259E068-37189
chr101868896418689153E069-38295
chr101868920318690150E069-37298
chr101869019418690259E069-37189
chr101869028818690596E069-36852
chr101869088118691009E069-36439
chr101868896418689153E070-38295
chr101868920318690150E070-37298
chr101868896418689153E071-38295
chr101868920318690150E071-37298
chr101869019418690259E071-37189
chr101868896418689153E072-38295
chr101868920318690150E072-37298
chr101869019418690259E072-37189
chr101869028818690596E072-36852
chr101869088118691009E072-36439
chr101869103618691212E072-36236
chr101869241418692464E072-34984
chr101868896418689153E073-38295
chr101868920318690150E073-37298
chr101869019418690259E073-37189
chr101869028818690596E073-36852
chr101869088118691009E073-36439
chr101869103618691212E073-36236
chr101868896418689153E074-38295
chr101868920318690150E074-37298
chr101868896418689153E081-38295
chr101868920318690150E081-37298
chr101868896418689153E082-38295
chr101868920318690150E082-37298
chr101869019418690259E082-37189