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rs79139973
Organism:
Homo sapiens
Alleles:
insATAA
Gene : Feature
None
p-value:
Check p-value
Variation Type:
Indel (Insertion and Deletion)
Frequency:
None (
Position:
chr3:164849972-164849974 (GRCh38.p7) (3q26.1)
Phenotype:
AD
Dataset:
GWASdb2
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 3
NC_000003.12:g.164849974_164849975insATAA
GRCh37.p13 chr 3
NC_000003.11:g.164567762_164567763insATAA
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
PMID
Title
Author
Journal
24962325
Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Kapoor M
Drug Alcohol Depend
P-Value
SNP ID
p-value
Traits
Study
rs79139973
2.91E-08
alcohol dependence (age at onset)
24962325
eQTL of rs79139973 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
There is no eQTL annotation for this SNP
meQTL of rs79139973 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 3(NC_000003.12:g.164849974_164849975insATAA)
GRCh37.p13 chr 3(NC_000003.11:g.164567762_164567763insATAA)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.