Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.122581485A>G |
GRCh37.p13 chr 11 | NC_000011.9:g.122452193A>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.862 | G=0.138 |
1000Genomes | American | Sub | 694 | A=0.690 | G=0.310 |
1000Genomes | East Asian | Sub | 1008 | A=0.533 | G=0.467 |
1000Genomes | Europe | Sub | 1006 | A=0.896 | G=0.104 |
1000Genomes | Global | Study-wide | 5008 | A=0.758 | G=0.242 |
1000Genomes | South Asian | Sub | 978 | A=0.750 | G=0.250 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.909 | G=0.091 |
The Genome Aggregation Database | African | Sub | 8690 | A=0.844 | G=0.156 |
The Genome Aggregation Database | American | Sub | 836 | A=0.630 | G=0.370 |
The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.544 | G=0.456 |
The Genome Aggregation Database | Europe | Sub | 18474 | A=0.920 | G=0.080 |
The Genome Aggregation Database | Global | Study-wide | 29908 | A=0.869 | G=0.130 |
The Genome Aggregation Database | Other | Sub | 300 | A=0.930 | G=0.070 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.859 | G=0.140 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.912 | G=0.088 |
PMID | Title | Author | Journal |
---|---|---|---|
21529783 | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. | Heath AC | Biol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7925049 | 3E-05 | alcoholism (heaviness of drinking) | 21529783 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 122499432 | 122500097 | E067 | 47239 |
chr11 | 122500150 | 122500240 | E067 | 47957 |
chr11 | 122469600 | 122469660 | E068 | 17407 |
chr11 | 122469835 | 122469939 | E068 | 17642 |
chr11 | 122469963 | 122470042 | E068 | 17770 |
chr11 | 122470399 | 122470449 | E068 | 18206 |
chr11 | 122499432 | 122500097 | E070 | 47239 |
chr11 | 122498609 | 122498673 | E072 | 46416 |
chr11 | 122499432 | 122500097 | E073 | 47239 |
chr11 | 122404732 | 122404883 | E081 | -47310 |
chr11 | 122498609 | 122498673 | E081 | 46416 |
chr11 | 122498962 | 122499012 | E081 | 46769 |
chr11 | 122499307 | 122499361 | E081 | 47114 |
chr11 | 122499432 | 122500097 | E081 | 47239 |
chr11 | 122500734 | 122500882 | E081 | 48541 |
chr11 | 122500899 | 122501070 | E081 | 48706 |
chr11 | 122501099 | 122501159 | E081 | 48906 |
chr11 | 122501181 | 122501280 | E081 | 48988 |
chr11 | 122501345 | 122501575 | E081 | 49152 |
chr11 | 122499432 | 122500097 | E082 | 47239 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 122451202 | 122452452 | E067 | 0 |
chr11 | 122427177 | 122427280 | E068 | -24913 |
chr11 | 122427287 | 122427719 | E068 | -24474 |
chr11 | 122427772 | 122427869 | E068 | -24324 |
chr11 | 122451202 | 122452452 | E068 | 0 |
chr11 | 122427287 | 122427719 | E069 | -24474 |
chr11 | 122427772 | 122427869 | E069 | -24324 |
chr11 | 122451202 | 122452452 | E069 | 0 |
chr11 | 122427287 | 122427719 | E070 | -24474 |
chr11 | 122427772 | 122427869 | E070 | -24324 |
chr11 | 122451202 | 122452452 | E070 | 0 |
chr11 | 122427177 | 122427280 | E071 | -24913 |
chr11 | 122427287 | 122427719 | E071 | -24474 |
chr11 | 122427772 | 122427869 | E071 | -24324 |
chr11 | 122451202 | 122452452 | E071 | 0 |
chr11 | 122427287 | 122427719 | E072 | -24474 |
chr11 | 122427772 | 122427869 | E072 | -24324 |
chr11 | 122451202 | 122452452 | E072 | 0 |
chr11 | 122427177 | 122427280 | E073 | -24913 |
chr11 | 122427287 | 122427719 | E073 | -24474 |
chr11 | 122427772 | 122427869 | E073 | -24324 |
chr11 | 122451202 | 122452452 | E073 | 0 |
chr11 | 122451202 | 122452452 | E081 | 0 |
chr11 | 122427287 | 122427719 | E082 | -24474 |
chr11 | 122427772 | 122427869 | E082 | -24324 |