rs7936502

Homo sapiens
G>T
EHF : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0405 (12121/29896,GnomAD)
G==0418 (12180/29118,TOPMED)
G==0465 (2328/5008,1000G)
G==0367 (1416/3854,ALSPAC)
G==0379 (1406/3708,TWINSUK)
chr11:34638260 (GRCh38.p7) (11p13)
AD
GWASdb2
1   publication(s)
See rs on genome
121 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.34638260G>T
GRCh37.p13 chr 11NC_000011.9:g.34659807G>T
EHF RefSeqGeneNG_029177.1:g.22220G>T

Gene: EHF, ETS homologous factor(plus strand)

Molecule type Change Amino acid[Codon] SO Term
EHF transcript variant 3NM_001206615.1:c.N/AIntron Variant
EHF transcript variant 1NM_001206616.1:c.N/AIntron Variant
EHF transcript variant 2NM_012153.5:c.N/AIntron Variant
EHF transcript variant X1XM_005252857.1:c.N/AIntron Variant
EHF transcript variant X5XM_005252860.1:c.N/AIntron Variant
EHF transcript variant X10XM_005252861.1:c.N/AIntron Variant
EHF transcript variant X11XM_005252862.1:c.N/AIntron Variant
EHF transcript variant X2XM_011519983.1:c.N/AIntron Variant
EHF transcript variant X3XM_011519984.1:c.N/AIntron Variant
EHF transcript variant X7XM_017017534.1:c.N/AIntron Variant
EHF transcript variant X7XM_011519985.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.456T=0.544
1000GenomesAmericanSub694G=0.440T=0.560
1000GenomesEast AsianSub1008G=0.641T=0.359
1000GenomesEuropeSub1006G=0.387T=0.613
1000GenomesGlobalStudy-wide5008G=0.465T=0.535
1000GenomesSouth AsianSub978G=0.390T=0.610
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.367T=0.633
The Genome Aggregation DatabaseAfricanSub8706G=0.449T=0.551
The Genome Aggregation DatabaseAmericanSub836G=0.350T=0.650
The Genome Aggregation DatabaseEast AsianSub1616G=0.623T=0.377
The Genome Aggregation DatabaseEuropeSub18436G=0.368T=0.631
The Genome Aggregation DatabaseGlobalStudy-wide29896G=0.405T=0.594
The Genome Aggregation DatabaseOtherSub302G=0.360T=0.640
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.418T=0.581
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.379T=0.621
PMID Title Author Journal
19581569Genome-wide association study of alcohol dependence.Treutlein JArch Gen Psychiatry

P-Value

SNP ID p-value Traits Study
rs79365021.61E-05alcohol dependence19581569

eQTL of rs7936502 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr11:34659807APIPENSG00000149089.8G>T0.0000e+0-278239Cerebellum
Chr11:34659807APIPENSG00000149089.8G>T1.4000e-27-278239Cerebellar_Hemisphere

meQTL of rs7936502 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr113465289034653054E067-6753
chr113465309834653148E067-6659
chr113465323434653641E067-6166
chr113465365434654350E067-5457
chr113465435834654459E067-5348
chr113465484034656189E067-3618
chr113467276434672818E06712957
chr113467299934673500E06713192
chr113467465534674926E06714848
chr113467507234676258E06715265
chr113467636934677324E06716562
chr113467733034677531E06717523
chr113467761134677908E06717804
chr113467798334678291E06718176
chr113465128134651361E068-8446
chr113465139434651586E068-8221
chr113465289034653054E068-6753
chr113465309834653148E068-6659
chr113465484034656189E068-3618
chr113467185834672612E06812051
chr113467353834673640E06813731
chr113467377834673986E06813971
chr113467405734674122E06814250
chr113467427434674504E06814467
chr113467465534674926E06814848
chr113467507234676258E06815265
chr113467636934677324E06816562
chr113467733034677531E06817523
chr113463419334634273E069-25534
chr113463449634634719E069-25088
chr113463484134634912E069-24895
chr113465289034653054E069-6753
chr113465309834653148E069-6659
chr113465484034656189E069-3618
chr113467427434674504E06914467
chr113467465534674926E06914848
chr113467507234676258E06915265
chr113467636934677324E06916562
chr113467733034677531E06917523
chr113467761134677908E06917804
chr113467798334678291E06918176
chr113467834334678469E06918536
chr113465289034653054E070-6753
chr113465309834653148E070-6659
chr113465323434653641E070-6166
chr113465365434654350E070-5457
chr113465435834654459E070-5348
chr113465858134658766E070-1041
chr113465881734659290E070-517
chr113466304434663304E0703237
chr113463484134634912E071-24895
chr113463505834635282E071-24525
chr113463529234635363E071-24444
chr113463543934635552E071-24255
chr113463559234635903E071-23904
chr113463600834636132E071-23675
chr113465215234652240E071-7567
chr113465289034653054E071-6753
chr113465309834653148E071-6659
chr113465484034656189E071-3618
chr113465858134658766E071-1041
chr113465881734659290E071-517
chr113465999434660136E071187
chr113466031834660488E071511
chr113466063734660687E071830
chr113466093334661512E0711126
chr113467299934673500E07113192
chr113467353834673640E07113731
chr113467377834673986E07113971
chr113467405734674122E07114250
chr113467427434674504E07114467
chr113467465534674926E07114848
chr113467507234676258E07115265
chr113467636934677324E07116562
chr113467733034677531E07117523
chr113467761134677908E07117804
chr113467798334678291E07118176
chr113467834334678469E07118536
chr113467864034678796E07118833
chr113465289034653054E072-6753
chr113465309834653148E072-6659
chr113465484034656189E072-3618
chr113467427434674504E07214467
chr113467465534674926E07214848
chr113467507234676258E07215265
chr113467636934677324E07216562
chr113465309834653148E073-6659
chr113467636934677324E07316562
chr113465029234650375E074-9432
chr113465049734650537E074-9270
chr113465064334650743E074-9064
chr113465128134651361E074-8446
chr113465139434651586E074-8221
chr113465162734651712E074-8095
chr113465215234652240E074-7567
chr113465225634652386E074-7421
chr113465289034653054E074-6753
chr113465309834653148E074-6659
chr113465323434653641E074-6166
chr113465484034656189E074-3618
chr113465858134658766E074-1041
chr113465881734659290E074-517
chr113466154234662495E0741735
chr113467276434672818E07412957
chr113467299934673500E07413192
chr113467353834673640E07413731
chr113467377834673986E07413971
chr113467405734674122E07414250
chr113467427434674504E07414467
chr113467465534674926E07414848
chr113467507234676258E07415265
chr113467636934677324E07416562
chr113467733034677531E07417523
chr113467761134677908E07417804
chr113467798334678291E07418176
chr113467834334678469E07418536
chr113469348734693574E07433680
chr113469361734693745E07433810
chr113465323434653641E081-6166
chr113465323434653641E082-6166
chr113465365434654350E082-5457