rs7936879

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0098 (2937/29984,GnomAD)
G=0083 (2422/29118,TOPMED)
G=0146 (733/5008,1000G)
G=0120 (462/3854,ALSPAC)
G=0121 (448/3708,TWINSUK)
chr11:47955330 (GRCh38.p7) (11p11.2)
ND
GWASdb2
1   publication(s)
See rs on genome
151 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.47955330A>G
GRCh37.p13 chr 11NC_000011.9:g.47976882A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.995G=0.005
1000GenomesAmericanSub694A=0.900G=0.100
1000GenomesEast AsianSub1008A=0.684G=0.316
1000GenomesEuropeSub1006A=0.876G=0.124
1000GenomesGlobalStudy-wide5008A=0.854G=0.146
1000GenomesSouth AsianSub978A=0.780G=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.880G=0.120
The Genome Aggregation DatabaseAfricanSub8734A=0.973G=0.027
The Genome Aggregation DatabaseAmericanSub838A=0.900G=0.100
The Genome Aggregation DatabaseEast AsianSub1610A=0.693G=0.307
The Genome Aggregation DatabaseEuropeSub18500A=0.887G=0.112
The Genome Aggregation DatabaseGlobalStudy-wide29984A=0.902G=0.098
The Genome Aggregation DatabaseOtherSub302A=0.830G=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.916G=0.083
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.879G=0.121
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs79368793.43E-06alcohol and nictotine co-dependence20158304

eQTL of rs7936879 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7936879 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr114796354647964055E067-12827
chr114800428848005852E06727406
chr114800590148005946E06729019
chr114800781348008040E06730931
chr114800897948009766E06732097
chr114801250148013487E06735619
chr114802107248021212E06744190
chr114802181248021866E06744930
chr114802190548021959E06745023
chr114802267748022847E06745795
chr114802294248023670E06746060
chr114802381848023874E06746936
chr114802389648023936E06747014
chr114802425948024418E06747377
chr114802466748024723E06747785
chr114802567348026219E06748791
chr114802633848026378E06749456
chr114802644848026502E06749566
chr114795654947956599E068-20283
chr114795665847956867E068-20015
chr114796324147963365E068-13517
chr114796354647964055E068-12827
chr114799555647996400E06818674
chr114800414148004216E06827259
chr114800428848005852E06827406
chr114800590148005946E06829019
chr114800781348008040E06830931
chr114800812548008185E06831243
chr114800835348008608E06831471
chr114800897948009766E06832097
chr114801016348010213E06833281
chr114801250148013487E06835619
chr114801822148018354E06841339
chr114801845848018616E06841576
chr114801866948019701E06841787
chr114802294248023670E06846060
chr114802567348026219E06848791
chr114802633848026378E06849456
chr114802644848026502E06849566
chr114793764947938517E069-38365
chr114793880047939089E069-37793
chr114793915347940245E069-36637
chr114796292047963068E069-13814
chr114796324147963365E069-13517
chr114800414148004216E06927259
chr114800897948009766E06932097
chr114801250148013487E06935619
chr114801822148018354E06941339
chr114801845848018616E06941576
chr114801866948019701E06941787
chr114801978948019879E06942907
chr114802294248023670E06946060
chr114802567348026219E06948791
chr114802633848026378E06949456
chr114802644848026502E06949566
chr114793666747936711E070-40171
chr114793685047937593E070-39289
chr114793764947938517E070-38365
chr114793915347940245E070-36637
chr114793880047939089E071-37793
chr114793915347940245E071-36637
chr114796292047963068E071-13814
chr114796324147963365E071-13517
chr114799527147995532E07118389
chr114799555647996400E07118674
chr114800414148004216E07127259
chr114800428848005852E07127406
chr114800590148005946E07129019
chr114800781348008040E07130931
chr114800812548008185E07131243
chr114801016348010213E07133281
chr114801030248010354E07133420
chr114801157148011665E07134689
chr114801250148013487E07135619
chr114801789848018203E07141016
chr114801822148018354E07141339
chr114801845848018616E07141576
chr114801866948019701E07141787
chr114801978948019879E07142907
chr114801996948020901E07143087
chr114802107248021212E07144190
chr114802204848022110E07145166
chr114802212648022288E07145244
chr114802234848022459E07145466
chr114802267748022847E07145795
chr114802294248023670E07146060
chr114802381848023874E07146936
chr114802389648023936E07147014
chr114802425948024418E07147377
chr114802555148025622E07148669
chr114802567348026219E07148791
chr114802633848026378E07149456
chr114802644848026502E07149566
chr114796354647964055E072-12827
chr114800414148004216E07227259
chr114800428848005852E07227406
chr114800590148005946E07229019
chr114800897948009766E07232097
chr114801016348010213E07233281
chr114801030248010354E07233420
chr114801157148011665E07234689
chr114801202048012158E07235138
chr114801220248012372E07235320
chr114801250148013487E07235619
chr114801351948013684E07236637
chr114801789848018203E07241016
chr114801822148018354E07241339
chr114801845848018616E07241576
chr114801866948019701E07241787
chr114802567348026219E07248791
chr114802633848026378E07249456
chr114802644848026502E07249566
chr114793764947938517E073-38365
chr114793880047939089E073-37793
chr114793915347940245E073-36637
chr114800897948009766E07332097
chr114801669548017314E07339813
chr114802567348026219E07348791
chr114802633848026378E07349456
chr114802644848026502E07349566
chr114793764947938517E074-38365
chr114796292047963068E074-13814
chr114796324147963365E074-13517
chr114799527147995532E07418389
chr114799555647996400E07418674
chr114800414148004216E07427259
chr114800428848005852E07427406
chr114800590148005946E07429019
chr114800897948009766E07432097
chr114801016348010213E07433281
chr114801157148011665E07434689
chr114801202048012158E07435138
chr114801220248012372E07435320
chr114801250148013487E07435619
chr114801789848018203E07441016
chr114801822148018354E07441339
chr114801845848018616E07441576
chr114801866948019701E07441787
chr114801996948020901E07443087
chr114802267748022847E07445795
chr114802294248023670E07446060
chr114802555148025622E07448669
chr114802567348026219E07448791
chr114802633848026378E07449456
chr114802644848026502E07449566
chr114793685047937593E081-39289
chr114793764947938517E081-38365
chr114793880047939089E081-37793
chr114793915347940245E081-36637
chr114800414148004216E08127259
chr114793764947938517E082-38365










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr114800037448003870E06723492
chr114800037448003870E06823492
chr114800037448003870E06923492
chr114800037448003870E07023492
chr114800037448003870E07123492
chr114800037448003870E07223492
chr114800037448003870E07323492
chr114800037448003870E07423492
chr114800037448003870E08223492