rs7942511

Homo sapiens
A>G
OR10A3 : 2KB Upstream Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0386 (11544/29862,GnomAD)
G=0341 (9951/29118,TOPMED)
G=0397 (1987/5008,1000G)
G=0407 (1568/3854,ALSPAC)
G=0408 (1513/3708,TWINSUK)
chr11:7940384 (GRCh38.p7) (11p15.4)
AD
GWASdb2
1   publication(s)
See rs on genome
27 Enhancers around
31 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.7940384A>G
GRCh37.p13 chr 11NC_000011.9:g.7961931A>G
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.171378A>G
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.171885A>G

Gene: OR10A3, olfactory receptor family 10 subfamily A member 3(minus strand): 2KB Upstream Variant

Molecule type Change Amino acid[Codon] SO Term
OR10A3 transcriptNM_001003745.1:c.N/AUpstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.762G=0.238
1000GenomesAmericanSub694A=0.610G=0.390
1000GenomesEast AsianSub1008A=0.491G=0.509
1000GenomesEuropeSub1006A=0.556G=0.444
1000GenomesGlobalStudy-wide5008A=0.603G=0.397
1000GenomesSouth AsianSub978A=0.550G=0.450
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.593G=0.407
The Genome Aggregation DatabaseAfricanSub8684A=0.745G=0.255
The Genome Aggregation DatabaseAmericanSub834A=0.620G=0.380
The Genome Aggregation DatabaseEast AsianSub1608A=0.498G=0.502
The Genome Aggregation DatabaseEuropeSub18436A=0.562G=0.437
The Genome Aggregation DatabaseGlobalStudy-wide29862A=0.613G=0.386
The Genome Aggregation DatabaseOtherSub300A=0.500G=0.500
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.658G=0.341
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.592G=0.408
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs79425117.4E-05alcohol consumption23953852

eQTL of rs7942511 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7942511 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1180076118007848E06745680
chr1180105818010710E06748650
chr1180116968011736E06749765
chr1180076118007848E06845680
chr1180105818010710E06848650
chr1180076118007848E06945680
chr1180105818010710E06948650
chr1179858687986265E07023937
chr1180076118007848E07045680
chr1180105818010710E07048650
chr1180105818010710E07148650
chr1180116968011736E07149765
chr1180072428007477E07245311
chr1180075268007574E07245595
chr1180076118007848E07245680
chr1180105818010710E07248650
chr1180076118007848E07345680
chr1180105818010710E07348650
chr1180076118007848E07445680
chr1180105818010710E07448650
chr1179858687986265E08223937
chr1180069938007037E08245062
chr1180072428007477E08245311
chr1180075268007574E08245595
chr1180076118007848E08245680
chr1180105818010710E08248650
chr1180116968011736E08249765









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1180078508009092E06745919
chr1180092438009487E06747312
chr1180094988009671E06747567
chr1180078508009092E06845919
chr1180092438009487E06847312
chr1180094988009671E06847567
chr1180078508009092E06945919
chr1180092438009487E06947312
chr1180094988009671E06947567
chr1180078508009092E07045919
chr1180092438009487E07047312
chr1180094988009671E07047567
chr1180078508009092E07145919
chr1180092438009487E07147312
chr1180094988009671E07147567
chr1180078508009092E07245919
chr1180092438009487E07247312
chr1180094988009671E07247567
chr1180078508009092E07345919
chr1180092438009487E07347312
chr1180094988009671E07347567
chr1179492487949467E074-12464
chr1179494767949625E074-12306
chr1180078508009092E07445919
chr1180092438009487E07447312
chr1180094988009671E07447567
chr1180092438009487E08147312
chr1180094988009671E08147567
chr1180078508009092E08245919
chr1180092438009487E08247312
chr1180094988009671E08247567