SNP Detail Info-rs7944388

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0064 (7394/115126,ExAC)
G=0077 (2304/29766,GnomAD)
G=0073 (2148/29118,TOPMED)
A==0080 (1051/12998,GO-ESP)
G=0082 (409/5008,1000G)
G=0065 (252/3854,ALSPAC)
G=0066 (243/3708,TWINSUK)

Position: chr11:5121441 (GRCh38.p7) (11p15.4)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.5121441A>G
GRCh37.p13 chr 11	NC_000011.9:g.5142671A>G
OR52A4P pseudogene	NG_029079.1:g.238T>C

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.852	G=0.148
1000Genomes	American	Sub	694	A=0.960	G=0.040
1000Genomes	East Asian	Sub	1008	A=0.911	G=0.089
1000Genomes	Europe	Sub	1006	A=0.926	G=0.074
1000Genomes	Global	Study-wide	5008	A=0.918	G=0.082
1000Genomes	South Asian	Sub	978	A=0.980	G=0.020
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.935	G=0.065
The Exome Aggregation Consortium	American	Sub	21608	A=0.934	G=0.065
The Exome Aggregation Consortium	Asian	Sub	21112	A=0.942	G=0.057
The Exome Aggregation Consortium	Europe	Sub	71568	A=0.934	G=0.065
The Exome Aggregation Consortium	Global	Study-wide	115126	A=0.935	G=0.064
The Exome Aggregation Consortium	Other	Sub	838	A=0.930	G=0.070
The Genome Aggregation Database	African	Sub	8568	A=0.893	G=0.107
The Genome Aggregation Database	American	Sub	834	A=0.960	G=0.040
The Genome Aggregation Database	East Asian	Sub	1578	A=0.895	G=0.105
The Genome Aggregation Database	Europe	Sub	18484	A=0.937	G=0.062
The Genome Aggregation Database	Global	Study-wide	29766	A=0.922	G=0.077
The Genome Aggregation Database	Other	Sub	302	A=0.910	G=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.926	G=0.073
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.934	G=0.066

PMID	Title	Author	Journal
22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Zuo L	Am J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID	p-value	Traits	Study
rs7944388	5.7E-06	alcohol and nictotine co-dependence	22488850

eQTL of rs7944388 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs7944388 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7944388

Genomic Coordinates

Population Frequency

P-Value

eQTL of rs7944388 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs7944388 in Fetal Brain

Genomic View

Chromatin Interaction