| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.15215264T>C |
| GRCh37.p13 chr 12 | NC_000012.11:g.15368198T>C |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| RERG transcript variant 2 | NM_001190726.1:c. | N/A | Intron Variant |
| RERG transcript variant 1 | NM_032918.2:c. | N/A | Intron Variant |
| RERG transcript variant X1 | XM_017020121.1:c. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | T=0.481 | C=0.519 |
| 1000Genomes | American | Sub | 694 | T=0.790 | C=0.210 |
| 1000Genomes | East Asian | Sub | 1008 | T=0.755 | C=0.245 |
| 1000Genomes | Europe | Sub | 1006 | T=0.651 | C=0.349 |
| 1000Genomes | Global | Study-wide | 5008 | T=0.657 | C=0.343 |
| 1000Genomes | South Asian | Sub | 978 | T=0.710 | C=0.290 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.683 | C=0.317 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.626 | C=0.373 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.669 | C=0.331 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs7955309 | 0.000473 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 15375096 | 15375150 | E067 | 6898 |
| chr12 | 15375265 | 15375417 | E067 | 7067 |
| chr12 | 15319444 | 15319504 | E068 | -48694 |
| chr12 | 15320261 | 15320338 | E068 | -47860 |
| chr12 | 15320396 | 15320436 | E068 | -47762 |
| chr12 | 15332358 | 15332815 | E068 | -35383 |
| chr12 | 15332816 | 15332929 | E068 | -35269 |
| chr12 | 15332949 | 15333203 | E068 | -34995 |
| chr12 | 15333322 | 15333493 | E068 | -34705 |
| chr12 | 15333537 | 15333639 | E068 | -34559 |
| chr12 | 15333670 | 15333829 | E068 | -34369 |
| chr12 | 15334060 | 15334535 | E068 | -33663 |
| chr12 | 15334571 | 15334669 | E068 | -33529 |
| chr12 | 15334701 | 15334936 | E068 | -33262 |
| chr12 | 15339587 | 15339889 | E068 | -28309 |
| chr12 | 15339949 | 15340050 | E068 | -28148 |
| chr12 | 15346891 | 15347350 | E068 | -20848 |
| chr12 | 15347372 | 15347448 | E068 | -20750 |
| chr12 | 15347495 | 15347641 | E068 | -20557 |
| chr12 | 15348070 | 15348846 | E068 | -19352 |
| chr12 | 15360568 | 15360622 | E068 | -7576 |
| chr12 | 15360692 | 15360742 | E068 | -7456 |
| chr12 | 15368763 | 15368813 | E068 | 565 |
| chr12 | 15368931 | 15369131 | E068 | 733 |
| chr12 | 15375096 | 15375150 | E068 | 6898 |
| chr12 | 15375265 | 15375417 | E068 | 7067 |
| chr12 | 15393154 | 15393198 | E070 | 24956 |
| chr12 | 15332816 | 15332929 | E071 | -35269 |
| chr12 | 15332949 | 15333203 | E071 | -34995 |
| chr12 | 15333322 | 15333493 | E071 | -34705 |
| chr12 | 15375096 | 15375150 | E072 | 6898 |
| chr12 | 15375265 | 15375417 | E072 | 7067 |
| chr12 | 15346282 | 15346469 | E081 | -21729 |
| chr12 | 15348070 | 15348846 | E081 | -19352 |
| chr12 | 15364282 | 15364381 | E081 | -3817 |
| chr12 | 15365534 | 15365599 | E081 | -2599 |
| chr12 | 15365605 | 15365883 | E081 | -2315 |
| chr12 | 15366646 | 15367166 | E081 | -1032 |
| chr12 | 15375096 | 15375150 | E081 | 6898 |
| chr12 | 15346615 | 15346858 | E082 | -21340 |
| chr12 | 15346891 | 15347350 | E082 | -20848 |
| chr12 | 15347372 | 15347448 | E082 | -20750 |
| chr12 | 15347495 | 15347641 | E082 | -20557 |
| chr12 | 15365534 | 15365599 | E082 | -2599 |
| chr12 | 15365605 | 15365883 | E082 | -2315 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr12 | 15373458 | 15374927 | E067 | 5260 |
| chr12 | 15372217 | 15372267 | E068 | 4019 |
| chr12 | 15372274 | 15372324 | E068 | 4076 |
| chr12 | 15372367 | 15372417 | E068 | 4169 |
| chr12 | 15372439 | 15372489 | E068 | 4241 |
| chr12 | 15372694 | 15372746 | E068 | 4496 |
| chr12 | 15372781 | 15372838 | E068 | 4583 |
| chr12 | 15372871 | 15373126 | E068 | 4673 |
| chr12 | 15373138 | 15373387 | E068 | 4940 |
| chr12 | 15373458 | 15374927 | E068 | 5260 |
| chr12 | 15373458 | 15374927 | E069 | 5260 |
| chr12 | 15373458 | 15374927 | E070 | 5260 |
| chr12 | 15373458 | 15374927 | E071 | 5260 |
| chr12 | 15373458 | 15374927 | E072 | 5260 |
| chr12 | 15372871 | 15373126 | E073 | 4673 |
| chr12 | 15373138 | 15373387 | E073 | 4940 |
| chr12 | 15373458 | 15374927 | E073 | 5260 |
| chr12 | 15373458 | 15374927 | E074 | 5260 |