rs7961308

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0328 (9734/29622,GnomAD)
C=0319 (9311/29118,TOPMED)
C=0318 (1593/5008,1000G)
C=0328 (1263/3854,ALSPAC)
C=0354 (1314/3708,TWINSUK)
chr12:82010721 (GRCh38.p7) (12q21.31)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.82010721T>C
GRCh37.p13 chr 12NC_000012.11:g.82404500T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.745C=0.255
1000GenomesAmericanSub694T=0.630C=0.370
1000GenomesEast AsianSub1008T=0.602C=0.398
1000GenomesEuropeSub1006T=0.679C=0.321
1000GenomesGlobalStudy-wide5008T=0.682C=0.318
1000GenomesSouth AsianSub978T=0.720C=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.672C=0.328
The Genome Aggregation DatabaseAfricanSub8682T=0.732C=0.268
The Genome Aggregation DatabaseAmericanSub808T=0.630C=0.370
The Genome Aggregation DatabaseEast AsianSub1612T=0.630C=0.370
The Genome Aggregation DatabaseEuropeSub18220T=0.648C=0.352
The Genome Aggregation DatabaseGlobalStudy-wide29622T=0.671C=0.328
The Genome Aggregation DatabaseOtherSub300T=0.700C=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.680C=0.319
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.646C=0.354
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs79613084.1E-05alcoholism (heaviness of drinking)21529783

eQTL of rs7961308 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7961308 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr128244816982448845E08143669
chr128244908582449389E08144585