rs7979367

Homo sapiens
G>T
TMEM132D : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0479 (14324/29892,GnomAD)
T=0453 (13213/29118,TOPMED)
T=0429 (2149/5008,1000G)
G==0409 (1577/3854,ALSPAC)
G==0427 (1582/3708,TWINSUK)
chr12:129745862 (GRCh38.p7) (12q24.33)
AD
GWASCatalog
1   publication(s)
See rs on genome
21 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.129745862G>T
GRCh37.p13 chr 12NC_000012.11:g.130230407G>T

Gene: TMEM132D, transmembrane protein 132D(minus strand)

Molecule type Change Amino acid[Codon] SO Term
TMEM132D transcriptNM_133448.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.701T=0.299
1000GenomesAmericanSub694G=0.580T=0.420
1000GenomesEast AsianSub1008G=0.585T=0.415
1000GenomesEuropeSub1006G=0.426T=0.574
1000GenomesGlobalStudy-wide5008G=0.571T=0.429
1000GenomesSouth AsianSub978G=0.520T=0.480
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.409T=0.591
The Genome Aggregation DatabaseAfricanSub8688G=0.642T=0.358
The Genome Aggregation DatabaseAmericanSub838G=0.620T=0.380
The Genome Aggregation DatabaseEast AsianSub1612G=0.541T=0.459
The Genome Aggregation DatabaseEuropeSub18452G=0.391T=0.608
The Genome Aggregation DatabaseGlobalStudy-wide29892G=0.479T=0.520
The Genome Aggregation DatabaseOtherSub302G=0.400T=0.600
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.546T=0.453
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.427T=0.573
PMID Title Author Journal
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs79793676E-06alcohol dependence23942779

eQTL of rs7979367 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7979367 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr12130181072130181241E081-49166
chr12130181389130181483E081-48924
chr12130181546130182144E081-48263
chr12130183668130184072E081-46335
chr12130184101130184141E081-46266
chr12130184209130184320E081-46087
chr12130184379130184544E081-45863
chr12130184810130184904E081-45503
chr12130185016130185066E081-45341
chr12130185539130185589E081-44818
chr12130185620130185731E081-44676
chr12130185820130185987E081-44420
chr12130186996130187101E081-43306
chr12130187142130187189E081-43218
chr12130253114130253388E08122707
chr12130253519130253638E08123112
chr12130253999130254109E08123592
chr12130254377130254508E08123970
chr12130181072130181241E082-49166
chr12130181389130181483E082-48924
chr12130181546130182144E082-48263