rs7982504

Homo sapiens
T>A
DCLK1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0346 (10365/29900,GnomAD)
T==0331 (9665/29116,TOPMED)
T==0225 (1127/5008,1000G)
T==0388 (1497/3854,ALSPAC)
T==0378 (1400/3708,TWINSUK)
chr13:36067886 (GRCh38.p7) (13q13.3)
ND
GWASdb2
1   publication(s)
See rs on genome
97 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.36067886T>A
GRCh37.p13 chr 13NC_000013.10:g.36642023T>A

Gene: DCLK1, doublecortin like kinase 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
DCLK1 transcript variant 1NM_004734.4:c.N/AIntron Variant
DCLK1 transcript variant 2NM_001195415.1:c.N/AGenic Upstream Transcript Variant
DCLK1 transcript variant 3NM_001195416.1:c.N/AGenic Upstream Transcript Variant
DCLK1 transcript variant 4NM_001195430.1:c.N/AGenic Upstream Transcript Variant
DCLK1 transcript variant X1XM_005266592.2:c.N/AIntron Variant
DCLK1 transcript variant X2XM_006719893.2:c.N/AIntron Variant
DCLK1 transcript variant X1XM_017020847.1:c.N/AIntron Variant
DCLK1 transcript variant X2XM_017020848.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.253A=0.747
1000GenomesAmericanSub694T=0.230A=0.770
1000GenomesEast AsianSub1008T=0.014A=0.986
1000GenomesEuropeSub1006T=0.426A=0.574
1000GenomesGlobalStudy-wide5008T=0.225A=0.775
1000GenomesSouth AsianSub978T=0.190A=0.810
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.388A=0.612
The Genome Aggregation DatabaseAfricanSub8698T=0.283A=0.717
The Genome Aggregation DatabaseAmericanSub834T=0.230A=0.770
The Genome Aggregation DatabaseEast AsianSub1622T=0.008A=0.992
The Genome Aggregation DatabaseEuropeSub18444T=0.412A=0.587
The Genome Aggregation DatabaseGlobalStudy-wide29900T=0.346A=0.653
The Genome Aggregation DatabaseOtherSub302T=0.340A=0.660
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.331A=0.668
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.378A=0.622
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs79825040.000657nicotine smoking19268276

eQTL of rs7982504 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7982504 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr133663508336635133E067-6890
chr133663515536635525E067-6498
chr133663580936636064E068-5959
chr133666337536663667E06821352
chr133666371336663930E06821690
chr133660127836601344E070-40679
chr133660335036603479E070-38544
chr133660353136603711E070-38312
chr133660492436606102E070-35921
chr133660921636609313E070-32710
chr133663213136632571E070-9452
chr133663286736632989E070-9034
chr133663313236633888E070-8135
chr133663456836634618E070-7405
chr133663508336635133E070-6890
chr133663515536635525E070-6498
chr133664319836643843E0701175
chr133665059536650648E0708572
chr133665091236650962E0708889
chr133667025236670460E07028229
chr133667046536670627E07028442
chr133667065036671186E07028627
chr133667119936671300E07029176
chr133667142236671472E07029399
chr133667454836674601E07032525
chr133667527836675810E07033255
chr133667799036678105E07035967
chr133667836736678537E07036344
chr133667799036678105E07135967
chr133666259436662644E07220571
chr133666289536663058E07220872
chr133666337536663667E07221352
chr133666371336663930E07221690
chr133666394336664134E07221920
chr133666424036664290E07222217
chr133666430336664551E07222280
chr133667799036678105E07235967
chr133667836736678537E07236344
chr133661206136612626E073-29397
chr133661265936612740E073-29283
chr133662281336622863E073-19160
chr133662302436623094E073-18929
chr133662320736623329E073-18694
chr133662338636623483E073-18540
chr133667836736678537E07336344
chr133669060236690652E07348579
chr133667836736678537E07436344
chr133660492436606102E081-35921
chr133660707836607319E081-34704
chr133660743536607485E081-34538
chr133660897536609045E081-32978
chr133660921636609313E081-32710
chr133661194536611995E081-30028
chr133661206136612626E081-29397
chr133661265936612740E081-29283
chr133661421736614343E081-27680
chr133661466836614783E081-27240
chr133662281336622863E081-19160
chr133662302436623094E081-18929
chr133663213136632571E081-9452
chr133664822236648319E0816199
chr133664976536649815E0817742
chr133665006936650138E0818046
chr133665059536650648E0818572
chr133666902136669145E08126998
chr133667025236670460E08128229
chr133667046536670627E08128442
chr133667065036671186E08128627
chr133667119936671300E08129176
chr133667799036678105E08135967
chr133667836736678537E08136344
chr133668182836683474E08139805
chr133668804236688120E08146019
chr133660707836607319E082-34704
chr133660743536607485E082-34538
chr133660897536609045E082-32978
chr133660921636609313E082-32710
chr133661206136612626E082-29397
chr133661265936612740E082-29283
chr133663313236633888E082-8135
chr133663456836634618E082-7405
chr133663508336635133E082-6890
chr133663515536635525E082-6498
chr133663553536635788E082-6235
chr133663580936636064E082-5959
chr133664596536646015E0823942
chr133664976536649815E0827742
chr133666860336668725E08226580
chr133666878136668976E08226758
chr133666902136669145E08226998
chr133667025236670460E08228229
chr133667046536670627E08228442
chr133667065036671186E08228627
chr133667119936671300E08229176
chr133667231636672517E08230293
chr133667527836675810E08233255
chr133667891436678999E08236891