SNP Detail Info-rs7983827

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0425 (12735/29938,GnomAD)
G==0476 (13866/29118,TOPMED)
G==0468 (2346/5008,1000G)
G==0419 (1616/3854,ALSPAC)
G==0392 (1454/3708,TWINSUK)

Position: chr13:86041213 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86041213G>A
GRCh37.p13 chr 13	NC_000013.10:g.86615348G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.526	A=0.474
1000Genomes	American	Sub	694	G=0.520	A=0.480
1000Genomes	East Asian	Sub	1008	G=0.401	A=0.599
1000Genomes	Europe	Sub	1006	G=0.406	A=0.594
1000Genomes	Global	Study-wide	5008	G=0.468	A=0.532
1000Genomes	South Asian	Sub	978	G=0.490	A=0.510
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.419	A=0.581
The Genome Aggregation Database	African	Sub	8710	G=0.538	A=0.462
The Genome Aggregation Database	American	Sub	832	G=0.530	A=0.470
The Genome Aggregation Database	East Asian	Sub	1610	G=0.399	A=0.601
The Genome Aggregation Database	Europe	Sub	18486	G=0.368	A=0.631
The Genome Aggregation Database	Global	Study-wide	29938	G=0.425	A=0.574
The Genome Aggregation Database	Other	Sub	300	G=0.490	A=0.510
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.476	A=0.523
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.392	A=0.608

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7983827	0.00046	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7983827