rs8009082

Homo sapiens
C>A
TRIM9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0201 (6047/29950,GnomAD)
A=0192 (5591/29118,TOPMED)
A=0130 (653/5008,1000G)
A=0251 (967/3854,ALSPAC)
A=0232 (859/3708,TWINSUK)
chr14:51032626 (GRCh38.p7) (14q22.1)
ND
GWASdb2
2   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.51032626C>A
GRCh37.p13 chr 14NC_000014.8:g.51499344C>A

Gene: TRIM9, tripartite motif containing 9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
TRIM9 transcript variant 1NM_015163.5:c.N/AIntron Variant
TRIM9 transcript variant 2NM_052978.4:c.N/AIntron Variant
TRIM9 transcript variant X4XM_005267301.3:c.N/AIntron Variant
TRIM9 transcript variant X6XM_005267302.3:c.N/AIntron Variant
TRIM9 transcript variant X2XM_006720018.3:c.N/AIntron Variant
TRIM9 transcript variant X1XM_011536389.2:c.N/AIntron Variant
TRIM9 transcript variant X3XM_017020943.1:c.N/AIntron Variant
TRIM9 transcript variant X5XM_017020944.1:c.N/AIntron Variant
TRIM9 transcript variant X7XM_017020945.1:c.N/AIntron Variant
TRIM9 transcript variant X8XM_017020946.1:c.N/AIntron Variant
TRIM9 transcript variant X9XM_017020947.1:c.N/AIntron Variant
TRIM9 transcript variant X10XM_017020948.1:c.N/AIntron Variant
TRIM9 transcript variant X15XM_017020949.1:c.N/AIntron Variant
TRIM9 transcript variant X16XM_017020950.1:c.N/AIntron Variant
TRIM9 transcript variant X11XR_001750135.1:n.N/AIntron Variant
TRIM9 transcript variant X14XR_001750136.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.916A=0.084
1000GenomesAmericanSub694C=0.850A=0.150
1000GenomesEast AsianSub1008C=0.936A=0.064
1000GenomesEuropeSub1006C=0.735A=0.265
1000GenomesGlobalStudy-wide5008C=0.870A=0.130
1000GenomesSouth AsianSub978C=0.890A=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.749A=0.251
The Genome Aggregation DatabaseAfricanSub8716C=0.889A=0.111
The Genome Aggregation DatabaseAmericanSub838C=0.870A=0.130
The Genome Aggregation DatabaseEast AsianSub1620C=0.934A=0.066
The Genome Aggregation DatabaseEuropeSub18474C=0.740A=0.259
The Genome Aggregation DatabaseGlobalStudy-wide29950C=0.798A=0.201
The Genome Aggregation DatabaseOtherSub302C=0.780A=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.808A=0.192
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.768A=0.232
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet
22719919Glutamate and synaptic plasticity systems and smoking behavior: results from a genetic association study.dos Santos VAPLoS One

P-Value

SNP ID p-value Traits Study
rs80090825.01E-05nicotine smoking19268276

eQTL of rs8009082 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8009082 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr145146711651467262E067-32082
chr145146730051467397E067-31947
chr145146742251467598E067-31746
chr145146920951469503E067-29841
chr145146956551469797E067-29547
chr145147119551472363E067-26981
chr145147241451472511E067-26833
chr145147265951472712E067-26632
chr145147275051473089E067-26255
chr145147314651474062E067-25282
chr145147420351474320E067-25024
chr145148063451480715E067-18629
chr145148073051481237E067-18107
chr145148147151481656E067-17688
chr145148172751481777E067-17567
chr145148189151481943E067-17401
chr145148406951484215E067-15129
chr145148432451484469E067-14875
chr145148592451485990E067-13354
chr145148603451486103E067-13241
chr145148626751486317E067-13027
chr145148658651487498E067-11846
chr145148749951487635E067-11709
chr145148788551487935E067-11409
chr145148796251488051E067-11293
chr145148811551488194E067-11150
chr145148825751488311E067-11033
chr145148946351489885E067-9459
chr145148993251490045E067-9299
chr145149011451490286E067-9058
chr145149034751490564E067-8780
chr145149072351491114E067-8230
chr145149111951491411E067-7933
chr145149173651491808E067-7536
chr145149266351492739E067-6605
chr145149330151493351E067-5993
chr145149356951493619E067-5725
chr145149363151493766E067-5578
chr145149399251494046E067-5298
chr145149469151494741E067-4603
chr145149475351494807E067-4537
chr145149481851494858E067-4486
chr145149522951495350E067-3994
chr145149620251496314E067-3030
chr145149654451496584E067-2760
chr145149718451497246E067-2098
chr145149728251497332E067-2012
chr145150724151507295E0677897
chr145150763651507687E0678292
chr145150778951508284E0678445
chr145150839251508442E0679048
chr145150867251509065E0679328
chr145150925551509315E0679911
chr145150962651509676E06710282
chr145150981551509907E06710471
chr145151015151510201E06710807
chr145152330751523910E06723963
chr145152408051524134E06724736
chr145152577451526216E06726430
chr145153219451532248E06732850
chr145153312251533186E06733778
chr145153341351533453E06734069
chr145153347751533534E06734133
chr145153353551533585E06734191
chr145153417151534287E06734827
chr145153430951534395E06734965
chr145154243751542527E06743093
chr145154300351543137E06743659
chr145154343351543483E06744089
chr145154399351544043E06744649
chr145154423751544908E06744893
chr145154597051546061E06746626
chr145154608651546770E06746742
chr145154757551547700E06748231
chr145154773251547843E06748388
chr145154822151548271E06748877
chr145154827451548336E06748930
chr145146501051465144E068-34200
chr145146624051466479E068-32865
chr145146654451466758E068-32586
chr145146711651467262E068-32082
chr145146730051467397E068-31947
chr145147088151470931E068-28413
chr145147100351471105E068-28239
chr145147119551472363E068-26981
chr145147241451472511E068-26833
chr145147265951472712E068-26632
chr145147275051473089E068-26255
chr145147314651474062E068-25282
chr145147420351474320E068-25024
chr145147459451474644E068-24700
chr145147520351475499E068-23845
chr145147573851475838E068-23506
chr145148063451480715E068-18629
chr145148073051481237E068-18107
chr145148147151481656E068-17688
chr145148172751481777E068-17567
chr145148189151481943E068-17401
chr145148406951484215E068-15129
chr145148432451484469E068-14875
chr145148592451485990E068-13354
chr145148603451486103E068-13241
chr145148626751486317E068-13027
chr145148658651487498E068-11846
chr145148749951487635E068-11709
chr145148788551487935E068-11409
chr145148796251488051E068-11293
chr145148811551488194E068-11150
chr145148825751488311E068-11033
chr145148926251489312E068-10032
chr145148946351489885E068-9459
chr145148993251490045E068-9299
chr145149011451490286E068-9058
chr145149034751490564E068-8780
chr145149072351491114E068-8230
chr145149111951491411E068-7933
chr145149173651491808E068-7536
chr145149266351492739E068-6605
chr145149330151493351E068-5993
chr145149356951493619E068-5725
chr145149363151493766E068-5578
chr145149399251494046E068-5298
chr145149469151494741E068-4603
chr145149475351494807E068-4537
chr145149481851494858E068-4486
chr145149620251496314E068-3030
chr145149654451496584E068-2760
chr145149718451497246E068-2098
chr145149728251497332E068-2012
chr145150703551507134E0687691
chr145150724151507295E0687897
chr145150763651507687E0688292
chr145150778951508284E0688445
chr145150839251508442E0689048
chr145150867251509065E0689328
chr145150925551509315E0689911
chr145152292851523059E06823584
chr145152330751523910E06823963
chr145152408051524134E06824736
chr145152493651524986E06825592
chr145152543051525525E06826086
chr145152565751525717E06826313
chr145152577451526216E06826430
chr145153190951532123E06832565
chr145153219451532248E06832850
chr145153254451532594E06833200
chr145153312251533186E06833778
chr145153341351533453E06834069
chr145153347751533534E06834133
chr145153353551533585E06834191
chr145153417151534287E06834827
chr145153430951534395E06834965
chr145153442751534499E06835083
chr145153856551539095E06839221
chr145154099851541100E06841654
chr145154128751541740E06841943
chr145154188551541935E06842541
chr145154300351543137E06843659
chr145154343351543483E06844089
chr145154423751544908E06844893
chr145154597051546061E06846626
chr145154608651546770E06846742
chr145154757551547700E06848231
chr145154773251547843E06848388
chr145154822151548271E06848877
chr145154827451548336E06848930
chr145145152151451594E069-47750
chr145146711651467262E069-32082
chr145146730051467397E069-31947
chr145146742251467598E069-31746
chr145146767551467826E069-31518
chr145147088151470931E069-28413
chr145147100351471105E069-28239
chr145147119551472363E069-26981
chr145147241451472511E069-26833
chr145147265951472712E069-26632
chr145147275051473089E069-26255
chr145147314651474062E069-25282
chr145147420351474320E069-25024
chr145147459451474644E069-24700
chr145148063451480715E069-18629
chr145148073051481237E069-18107
chr145148147151481656E069-17688
chr145148172751481777E069-17567
chr145148406951484215E069-15129
chr145148603451486103E069-13241
chr145148626751486317E069-13027
chr145148658651487498E069-11846
chr145148749951487635E069-11709
chr145148788551487935E069-11409
chr145148796251488051E069-11293
chr145148811551488194E069-11150
chr145148825751488311E069-11033
chr145148926251489312E069-10032
chr145148946351489885E069-9459
chr145148993251490045E069-9299
chr145149011451490286E069-9058
chr145149034751490564E069-8780
chr145149072351491114E069-8230
chr145149111951491411E069-7933
chr145149173651491808E069-7536
chr145149266351492739E069-6605
chr145149330151493351E069-5993
chr145149356951493619E069-5725
chr145149363151493766E069-5578
chr145149399251494046E069-5298
chr145149469151494741E069-4603
chr145149475351494807E069-4537
chr145149481851494858E069-4486
chr145149522951495350E069-3994
chr145149620251496314E069-3030
chr145149654451496584E069-2760
chr145149718451497246E069-2098
chr145150266751502962E0693323
chr145150724151507295E0697897
chr145150763651507687E0698292
chr145150778951508284E0698445
chr145150839251508442E0699048
chr145150867251509065E0699328
chr145150925551509315E0699911
chr145150962651509676E06910282
chr145150981551509907E06910471
chr145151015151510201E06910807
chr145152292851523059E06923584
chr145152330751523910E06923963
chr145152408051524134E06924736
chr145152441651524466E06925072
chr145152493651524986E06925592
chr145152543051525525E06926086
chr145152565751525717E06926313
chr145152577451526216E06926430
chr145153219451532248E06932850
chr145153254451532594E06933200
chr145153312251533186E06933778
chr145153341351533453E06934069
chr145153347751533534E06934133
chr145153353551533585E06934191
chr145153417151534287E06934827
chr145153430951534395E06934965
chr145153442751534499E06935083
chr145154099851541100E06941654
chr145154128751541740E06941943
chr145154188551541935E06942541
chr145154243751542527E06943093
chr145154300351543137E06943659
chr145154343351543483E06944089
chr145154423751544908E06944893
chr145154597051546061E06946626
chr145154608651546770E06946742
chr145154773251547843E06948388
chr145154822151548271E06948877
chr145154827451548336E06948930
chr145146873951468789E070-30555
chr145146890451468982E070-30362
chr145146920951469503E070-29841
chr145146956551469797E070-29547
chr145146984651469915E070-29429
chr145146999351470054E070-29290
chr145147052551470630E070-28714
chr145147088151470931E070-28413
chr145147100351471105E070-28239
chr145147119551472363E070-26981
chr145147241451472511E070-26833
chr145147265951472712E070-26632
chr145147275051473089E070-26255
chr145147314651474062E070-25282
chr145147420351474320E070-25024
chr145148073051481237E070-18107
chr145148147151481656E070-17688
chr145148172751481777E070-17567
chr145148592451485990E070-13354
chr145148603451486103E070-13241
chr145148626751486317E070-13027
chr145148658651487498E070-11846
chr145148749951487635E070-11709
chr145149011451490286E070-9058
chr145149034751490564E070-8780
chr145149072351491114E070-8230
chr145149111951491411E070-7933
chr145149173651491808E070-7536
chr145149475351494807E070-4537
chr145149481851494858E070-4486
chr145149522951495350E070-3994
chr145150724151507295E0707897
chr145150763651507687E0708292
chr145150867251509065E0709328
chr145150925551509315E0709911
chr145152330751523910E07023963
chr145152565751525717E07026313
chr145153341351533453E07034069
chr145153347751533534E07034133
chr145153353551533585E07034191
chr145153417151534287E07034827
chr145153430951534395E07034965
chr145145152151451594E071-47750
chr145145187951452012E071-47332
chr145146654451466758E071-32586
chr145146711651467262E071-32082
chr145146730051467397E071-31947
chr145146742251467598E071-31746
chr145147119551472363E071-26981
chr145147241451472511E071-26833
chr145147265951472712E071-26632
chr145147275051473089E071-26255
chr145147314651474062E071-25282
chr145147420351474320E071-25024
chr145147459451474644E071-24700
chr145148063451480715E071-18629
chr145148073051481237E071-18107
chr145148147151481656E071-17688
chr145148172751481777E071-17567
chr145148189151481943E071-17401
chr145148515451485219E071-14125
chr145148538751485548E071-13796
chr145148592451485990E071-13354
chr145148603451486103E071-13241
chr145148626751486317E071-13027
chr145148658651487498E071-11846
chr145148749951487635E071-11709
chr145148788551487935E071-11409
chr145148796251488051E071-11293
chr145148811551488194E071-11150
chr145148825751488311E071-11033
chr145148926251489312E071-10032
chr145148946351489885E071-9459
chr145148993251490045E071-9299
chr145149011451490286E071-9058
chr145149034751490564E071-8780
chr145149072351491114E071-8230
chr145149111951491411E071-7933
chr145149173651491808E071-7536
chr145149266351492739E071-6605
chr145149330151493351E071-5993
chr145149356951493619E071-5725
chr145149363151493766E071-5578
chr145149399251494046E071-5298
chr145149469151494741E071-4603
chr145149475351494807E071-4537
chr145149481851494858E071-4486
chr145149620251496314E071-3030
chr145149654451496584E071-2760
chr145149718451497246E071-2098
chr145149728251497332E071-2012
chr145150259451502662E0713250
chr145150266751502962E0713323
chr145150703551507134E0717691
chr145150724151507295E0717897
chr145150763651507687E0718292
chr145150778951508284E0718445
chr145150839251508442E0719048
chr145150867251509065E0719328
chr145152330751523910E07123963
chr145152408051524134E07124736
chr145152441651524466E07125072
chr145152493651524986E07125592
chr145153312251533186E07133778
chr145153341351533453E07134069
chr145153347751533534E07134133
chr145153353551533585E07134191
chr145153417151534287E07134827
chr145153430951534395E07134965
chr145154019451540784E07140850
chr145154343351543483E07144089
chr145154399351544043E07144649
chr145154423751544908E07144893
chr145154546751545556E07146123
chr145154561151545661E07146267
chr145154597051546061E07146626
chr145154608651546770E07146742
chr145154757551547700E07148231
chr145154773251547843E07148388
chr145146624051466479E072-32865
chr145146654451466758E072-32586
chr145146711651467262E072-32082
chr145146730051467397E072-31947
chr145146742251467598E072-31746
chr145146920951469503E072-29841
chr145146956551469797E072-29547
chr145147119551472363E072-26981
chr145147241451472511E072-26833
chr145147265951472712E072-26632
chr145147275051473089E072-26255
chr145147314651474062E072-25282
chr145147420351474320E072-25024
chr145147459451474644E072-24700
chr145147583951475899E072-23445
chr145148063451480715E072-18629
chr145148073051481237E072-18107
chr145148147151481656E072-17688
chr145148172751481777E072-17567
chr145148189151481943E072-17401
chr145148201851482069E072-17275
chr145148406951484215E072-15129
chr145148432451484469E072-14875
chr145148468051484964E072-14380
chr145148515451485219E072-14125
chr145148538751485548E072-13796
chr145148592451485990E072-13354
chr145148603451486103E072-13241
chr145148626751486317E072-13027
chr145148658651487498E072-11846
chr145148749951487635E072-11709
chr145148788551487935E072-11409
chr145148796251488051E072-11293
chr145148811551488194E072-11150
chr145148825751488311E072-11033
chr145148926251489312E072-10032
chr145148946351489885E072-9459
chr145148993251490045E072-9299
chr145149011451490286E072-9058
chr145149034751490564E072-8780
chr145149072351491114E072-8230
chr145149111951491411E072-7933
chr145149173651491808E072-7536
chr145149266351492739E072-6605
chr145149330151493351E072-5993
chr145149356951493619E072-5725
chr145149363151493766E072-5578
chr145149399251494046E072-5298
chr145149469151494741E072-4603
chr145149475351494807E072-4537
chr145149481851494858E072-4486
chr145149620251496314E072-3030
chr145149654451496584E072-2760
chr145149718451497246E072-2098
chr145149728251497332E072-2012
chr145150259451502662E0723250
chr145150266751502962E0723323
chr145150318151503231E0723837
chr145150606451506298E0726720
chr145150703551507134E0727691
chr145150724151507295E0727897
chr145150763651507687E0728292
chr145150778951508284E0728445
chr145150839251508442E0729048
chr145150867251509065E0729328
chr145152330751523910E07223963
chr145152408051524134E07224736
chr145152441651524466E07225072
chr145152493651524986E07225592
chr145152543051525525E07226086
chr145152565751525717E07226313
chr145152577451526216E07226430
chr145153190951532123E07232565
chr145153219451532248E07232850
chr145153254451532594E07233200
chr145153312251533186E07233778
chr145153341351533453E07234069
chr145153347751533534E07234133
chr145153353551533585E07234191
chr145153417151534287E07234827
chr145153430951534395E07234965
chr145153442751534499E07235083
chr145154128751541740E07241943
chr145154188551541935E07242541
chr145154300351543137E07243659
chr145154343351543483E07244089
chr145154399351544043E07244649
chr145154423751544908E07244893
chr145154546751545556E07246123
chr145154561151545661E07246267
chr145154597051546061E07246626
chr145154608651546770E07246742
chr145154757551547700E07248231
chr145154773251547843E07248388
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