rs8019291

Homo sapiens
G>C / G>T
SLC24A4 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0134 (4028/29962,GnomAD)
T=0168 (4909/29118,TOPMED)
T=0163 (817/5008,1000G)
chr14:92464820 (GRCh38.p7) (14q32.12)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.92464820G>C
GRCh38.p7 chr 14NC_000014.9:g.92464820G>T
GRCh37.p13 chr 14NC_000014.8:g.92931164G>C
GRCh37.p13 chr 14NC_000014.8:g.92931164G>T
SLC24A4 RefSeqGeneNG_023408.1:g.147240G>C
SLC24A4 RefSeqGeneNG_023408.1:g.147240G>T

Gene: SLC24A4, solute carrier family 24 member 4(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC24A4 transcript variant 1NM_153646.3:c.N/AIntron Variant
SLC24A4 transcript variant 2NM_153647.3:c.N/AIntron Variant
SLC24A4 transcript variant 3NM_153648.3:c.N/AIntron Variant
SLC24A4 transcript variant X7XM_005267342.2:c.N/AIntron Variant
SLC24A4 transcript variant X1XM_011536436.2:c.N/AIntron Variant
SLC24A4 transcript variant X2XM_011536437.2:c.N/AIntron Variant
SLC24A4 transcript variant X3XM_011536438.2:c.N/AIntron Variant
SLC24A4 transcript variant X4XM_011536439.2:c.N/AIntron Variant
SLC24A4 transcript variant X6XM_011536440.2:c.N/AIntron Variant
SLC24A4 transcript variant X7XM_011536441.2:c.N/AIntron Variant
SLC24A4 transcript variant X8XM_011536442.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.804T=0.196
1000GenomesAmericanSub694G=0.800T=0.200
1000GenomesEast AsianSub1008G=0.933T=0.067
1000GenomesEuropeSub1006G=0.875T=0.125
1000GenomesGlobalStudy-wide5008G=0.837T=0.163
1000GenomesSouth AsianSub978G=0.770T=0.230
The Genome Aggregation DatabaseAfricanSub8712G=0.815T=0.185
The Genome Aggregation DatabaseAmericanSub838G=0.820T=0.180
The Genome Aggregation DatabaseEast AsianSub1616G=0.930T=0.070
The Genome Aggregation DatabaseEuropeSub18494G=0.887T=0.113
The Genome Aggregation DatabaseGlobalStudy-wide29962G=0.865T=0.134
The Genome Aggregation DatabaseOtherSub302G=0.770T=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.831T=0.168
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs80192918.09E-06nicotine smoking19268276

eQTL of rs8019291 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8019291 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.