SNP Detail Info-rs8024393

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.50060690A>G
GRCh37.p13 chr 15	NC_000015.9:g.50352887A>G

Gene: ATP8B4, ATPase phospholipid transporting 8B4 (putative)(minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ATP8B4 transcript variant 1	NM_024837.3:c.	N/A	Intron Variant
ATP8B4 transcript variant 2	NR_073596.1:n.	N/A	Intron Variant
ATP8B4 transcript variant 3	NR_073597.1:n.	N/A	Intron Variant
ATP8B4 transcript variant 4	NR_073598.1:n.	N/A	Intron Variant
ATP8B4 transcript variant X1	XM_011522046.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X3	XM_011522047.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X4	XM_011522048.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X5	XM_011522049.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X11	XM_011522051.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X9	XM_011522052.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X8	XM_011522053.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X1	XM_011522056.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X17	XM_011522058.2:c.	N/A	Intron Variant
ATP8B4 transcript variant X2	XM_017022587.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X3	XM_017022588.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X4	XM_017022589.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X10	XM_017022590.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X9	XM_017022591.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X12	XM_017022592.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X15	XM_017022593.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X14	XM_017022594.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X30	XM_017022597.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X31	XM_017022598.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X32	XM_017022599.1:c.	N/A	Intron Variant
ATP8B4 transcript variant X16	XM_011522059.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X17	XM_011522060.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X18	XM_011522061.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X20	XM_011522062.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X21	XM_011522063.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X26	XM_011522064.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X27	XM_011522069.2:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X29	XM_011522070.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X21	XM_017022595.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X25	XM_017022596.1:c.	N/A	Genic Upstream Transcript Variant
ATP8B4 transcript variant X24	XR_001751394.1:n.	N/A	Intron Variant
ATP8B4 transcript variant X25	XR_001751395.1:n.	N/A	Intron Variant
ATP8B4 transcript variant X29	XR_001751396.1:n.	N/A	Intron Variant
ATP8B4 transcript variant X33	XR_001751397.1:n.	N/A	Intron Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.843	G=0.157
1000Genomes	American	Sub	694	A=0.960	G=0.040
1000Genomes	East Asian	Sub	1008	A=0.969	G=0.031
1000Genomes	Europe	Sub	1006	A=0.974	G=0.026
1000Genomes	Global	Study-wide	5008	A=0.926	G=0.074
1000Genomes	South Asian	Sub	978	A=0.920	G=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.972	G=0.028
The Genome Aggregation Database	African	Sub	8706	A=0.870	G=0.130
The Genome Aggregation Database	American	Sub	838	A=0.960	G=0.040
The Genome Aggregation Database	East Asian	Sub	1618	A=0.958	G=0.042
The Genome Aggregation Database	Europe	Sub	18498	A=0.974	G=0.025
The Genome Aggregation Database	Global	Study-wide	29962	A=0.942	G=0.057
The Genome Aggregation Database	Other	Sub	302	A=0.950	G=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.921	G=0.079
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.971	G=0.029

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs8024393	0.000335	alcohol dependence	21314694

eQTL of rs8024393 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs8024393 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	50343630	50343709	E067	-9178
chr15	50343766	50343816	E067	-9071
chr15	50343858	50344524	E067	-8363
chr15	50350147	50350950	E067	-1937
chr15	50347042	50348377	E068	-4510
chr15	50350147	50350950	E068	-1937
chr15	50343858	50344524	E069	-8363
chr15	50350147	50350950	E069	-1937
chr15	50343630	50343709	E071	-9178
chr15	50343766	50343816	E071	-9071
chr15	50343858	50344524	E071	-8363
chr15	50347042	50348377	E071	-4510
chr15	50348429	50348514	E071	-4373
chr15	50350147	50350950	E071	-1937
chr15	50359420	50359785	E071	6533
chr15	50359942	50359992	E071	7055
chr15	50359995	50360062	E071	7108
chr15	50350147	50350950	E072	-1937
chr15	50350147	50350950	E073	-1937
chr15	50343766	50343816	E074	-9071
chr15	50343858	50344524	E074	-8363
chr15	50350147	50350950	E074	-1937

rs8024393

Genomic Coordinates

Gene: ATP8B4, ATPase phospholipid transporting 8B4 (putative)(minus strand)

Population Frequency

P-Value

eQTL of rs8024393 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs8024393 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)